Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0829 and Atu0830 are separated by 230 nucleotides Atu0830 and Atu8138 are separated by 299 nucleotides Atu8138 and Atu0832 are separated by 173 nucleotides
Atu0829: Atu0829 - betaine aldehyde dehydrogenase, at 827,252 to 828,733
Atu0829
Atu0830: Atu0830 - choline dehydrogenase, at 828,964 to 830,613
Atu0830
Atu8138: Atu8138 - hypothetical protein, at 830,913 to 831,188
Atu8138
Atu0832: Atu0832 - chloride channel protein, at 831,362 to 832,678
Atu0832
Position (kb) 828
829
830
831 Strain fitness (log2 ratio) -1
0
1
2 at 828.097 kb on + strand, within Atu0829 at 828.110 kb on + strand, within Atu0829 at 828.115 kb on + strand, within Atu0829 at 828.123 kb on - strand, within Atu0829 at 828.215 kb on + strand, within Atu0829 at 828.228 kb on - strand, within Atu0829 at 828.292 kb on + strand, within Atu0829 at 828.292 kb on + strand, within Atu0829 at 828.292 kb on + strand, within Atu0829 at 828.298 kb on + strand, within Atu0829 at 828.314 kb on - strand, within Atu0829 at 828.314 kb on - strand, within Atu0829 at 828.401 kb on - strand, within Atu0829 at 828.424 kb on + strand, within Atu0829 at 828.442 kb on - strand, within Atu0829 at 828.463 kb on + strand, within Atu0829 at 828.470 kb on + strand, within Atu0829 at 828.470 kb on + strand, within Atu0829 at 828.470 kb on + strand, within Atu0829 at 828.566 kb on - strand, within Atu0829 at 828.695 kb on + strand at 828.705 kb on + strand at 828.759 kb on - strand at 828.759 kb on - strand at 828.793 kb on - strand at 828.824 kb on - strand at 828.883 kb on + strand at 828.899 kb on + strand at 828.899 kb on + strand at 828.899 kb on + strand at 828.933 kb on + strand at 828.945 kb on + strand at 829.085 kb on + strand at 829.105 kb on + strand at 829.177 kb on - strand, within Atu0830 at 829.282 kb on - strand, within Atu0830 at 829.284 kb on + strand, within Atu0830 at 829.296 kb on + strand, within Atu0830 at 829.296 kb on + strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.304 kb on - strand, within Atu0830 at 829.315 kb on + strand, within Atu0830 at 829.320 kb on + strand, within Atu0830 at 829.323 kb on - strand, within Atu0830 at 829.328 kb on - strand, within Atu0830 at 829.384 kb on - strand, within Atu0830 at 829.398 kb on + strand, within Atu0830 at 829.415 kb on - strand, within Atu0830 at 829.430 kb on - strand, within Atu0830 at 829.507 kb on - strand, within Atu0830 at 829.549 kb on + strand, within Atu0830 at 829.694 kb on - strand, within Atu0830 at 829.750 kb on + strand, within Atu0830 at 829.752 kb on + strand, within Atu0830 at 829.955 kb on + strand, within Atu0830 at 829.978 kb on + strand, within Atu0830 at 830.000 kb on + strand, within Atu0830 at 830.008 kb on - strand, within Atu0830 at 830.134 kb on - strand, within Atu0830 at 830.136 kb on + strand, within Atu0830 at 830.290 kb on + strand, within Atu0830 at 830.569 kb on - strand at 830.587 kb on - strand at 830.620 kb on + strand at 830.810 kb on + strand at 830.811 kb on + strand at 830.834 kb on + strand at 830.853 kb on + strand at 830.853 kb on + strand at 830.866 kb on - strand at 830.947 kb on + strand, within Atu8138 at 831.025 kb on + strand, within Atu8138 at 831.259 kb on - strand at 831.372 kb on - strand at 831.383 kb on + strand at 831.408 kb on - strand at 831.461 kb on + strand at 831.561 kb on + strand, within Atu0832 at 831.569 kb on - strand, within Atu0832
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 828,097 + Atu0829 0.57 +0.4 828,110 + Atu0829 0.58 +0.3 828,115 + Atu0829 0.58 +0.1 828,123 - Atu0829 0.59 -0.0 828,215 + Atu0829 0.65 -0.5 828,228 - Atu0829 0.66 -0.1 828,292 + Atu0829 0.70 +1.0 828,292 + Atu0829 0.70 -0.4 828,292 + Atu0829 0.70 +0.4 828,298 + Atu0829 0.71 -0.2 828,314 - Atu0829 0.72 -0.1 828,314 - Atu0829 0.72 +0.6 828,401 - Atu0829 0.78 -0.4 828,424 + Atu0829 0.79 +0.0 828,442 - Atu0829 0.80 -1.2 828,463 + Atu0829 0.82 -0.7 828,470 + Atu0829 0.82 -1.0 828,470 + Atu0829 0.82 +1.0 828,470 + Atu0829 0.82 -0.2 828,566 - Atu0829 0.89 -0.5 828,695 + -0.4 828,705 + -0.5 828,759 - -0.1 828,759 - +0.5 828,793 - +0.2 828,824 - +0.1 828,883 + -0.1 828,899 + +0.1 828,899 + -0.2 828,899 + -0.5 828,933 + -0.1 828,945 + -0.0 829,085 + -0.2 829,105 + +0.8 829,177 - Atu0830 0.13 -0.6 829,282 - Atu0830 0.19 -0.1 829,284 + Atu0830 0.19 +0.3 829,296 + Atu0830 0.20 +0.4 829,296 + Atu0830 0.20 -0.5 829,304 - Atu0830 0.21 +0.3 829,304 - Atu0830 0.21 -1.7 829,304 - Atu0830 0.21 +0.5 829,304 - Atu0830 0.21 -0.0 829,304 - Atu0830 0.21 -0.0 829,304 - Atu0830 0.21 -0.9 829,315 + Atu0830 0.21 -0.0 829,320 + Atu0830 0.22 +0.1 829,323 - Atu0830 0.22 +0.1 829,328 - Atu0830 0.22 -0.1 829,384 - Atu0830 0.25 +0.1 829,398 + Atu0830 0.26 +2.4 829,415 - Atu0830 0.27 -0.6 829,430 - Atu0830 0.28 +0.5 829,507 - Atu0830 0.33 -0.1 829,549 + Atu0830 0.35 +0.8 829,694 - Atu0830 0.44 -0.1 829,750 + Atu0830 0.48 -0.3 829,752 + Atu0830 0.48 -0.3 829,955 + Atu0830 0.60 +0.2 829,978 + Atu0830 0.61 +0.3 830,000 + Atu0830 0.63 +1.3 830,008 - Atu0830 0.63 +0.1 830,134 - Atu0830 0.71 -0.1 830,136 + Atu0830 0.71 +0.0 830,290 + Atu0830 0.80 +2.7 830,569 - +0.3 830,587 - -0.6 830,620 + -0.5 830,810 + +0.1 830,811 + +0.4 830,834 + -0.5 830,853 + +0.6 830,853 + -1.5 830,866 - +0.4 830,947 + Atu8138 0.12 +0.3 831,025 + Atu8138 0.41 +0.4 831,259 - -0.5 831,372 - -0.5 831,383 + -0.2 831,408 - +0.2 831,461 + +0.4 831,561 + Atu0832 0.15 -0.0 831,569 - Atu0832 0.16 +0.4
Or see this region's nucleotide sequence