Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24005

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05630 and AMB_RS24005 are separated by 232 nucleotidesAMB_RS24005 and AMB_RS23235 are separated by 159 nucleotides AMB_RS05630: AMB_RS05630 - amino acid decarboxylase, at 1,175,626 to 1,177,977 _RS05630 AMB_RS24005: AMB_RS24005 - PAS domain-containing sensor histidine kinase, at 1,178,210 to 1,179,724 _RS24005 AMB_RS23235: AMB_RS23235 - DUF3369 domain-containing protein, at 1,179,884 to 1,182,814 _RS23235 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -3 -2 -1 0 1at 1177.301 kb on + strand, within AMB_RS05630at 1177.301 kb on + strand, within AMB_RS05630at 1177.302 kb on - strand, within AMB_RS05630at 1177.527 kb on - strand, within AMB_RS05630at 1177.637 kb on + strand, within AMB_RS05630at 1177.638 kb on - strand, within AMB_RS05630at 1177.650 kb on - strand, within AMB_RS05630at 1177.672 kb on - strand, within AMB_RS05630at 1177.991 kb on - strandat 1177.991 kb on - strandat 1177.991 kb on - strandat 1178.029 kb on + strandat 1178.030 kb on - strandat 1178.125 kb on + strandat 1178.126 kb on - strandat 1178.137 kb on + strandat 1178.138 kb on - strandat 1178.138 kb on - strandat 1178.154 kb on - strandat 1178.167 kb on - strandat 1178.321 kb on + strandat 1178.322 kb on - strandat 1178.404 kb on + strand, within AMB_RS24005at 1178.404 kb on + strand, within AMB_RS24005at 1178.404 kb on + strand, within AMB_RS24005at 1178.404 kb on + strand, within AMB_RS24005at 1178.404 kb on + strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.405 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.407 kb on - strand, within AMB_RS24005at 1178.700 kb on - strand, within AMB_RS24005at 1178.700 kb on - strand, within AMB_RS24005at 1178.715 kb on - strand, within AMB_RS24005at 1178.971 kb on + strand, within AMB_RS24005at 1179.059 kb on + strand, within AMB_RS24005at 1179.059 kb on + strand, within AMB_RS24005at 1179.059 kb on + strand, within AMB_RS24005at 1179.060 kb on - strand, within AMB_RS24005at 1179.060 kb on - strand, within AMB_RS24005at 1179.107 kb on + strand, within AMB_RS24005at 1179.196 kb on + strand, within AMB_RS24005at 1179.196 kb on + strand, within AMB_RS24005at 1179.196 kb on + strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.197 kb on - strand, within AMB_RS24005at 1179.426 kb on - strand, within AMB_RS24005at 1179.426 kb on - strand, within AMB_RS24005at 1179.426 kb on - strand, within AMB_RS24005at 1179.534 kb on - strand, within AMB_RS24005at 1179.751 kb on + strandat 1179.751 kb on + strandat 1179.752 kb on - strandat 1179.752 kb on - strandat 1179.850 kb on - strandat 1179.850 kb on - strandat 1179.900 kb on + strandat 1179.900 kb on + strandat 1179.900 kb on + strandat 1179.901 kb on - strandat 1179.901 kb on - strandat 1179.901 kb on - strandat 1179.901 kb on - strandat 1179.901 kb on - strandat 1179.956 kb on - strandat 1180.055 kb on + strandat 1180.056 kb on - strandat 1180.056 kb on - strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.163 kb on + strandat 1180.164 kb on - strandat 1180.164 kb on - strandat 1180.164 kb on - strandat 1180.164 kb on - strandat 1180.164 kb on - strandat 1180.271 kb on + strand, within AMB_RS23235at 1180.271 kb on + strand, within AMB_RS23235at 1180.272 kb on - strand, within AMB_RS23235at 1180.338 kb on - strand, within AMB_RS23235at 1180.682 kb on + strand, within AMB_RS23235at 1180.683 kb on - strand, within AMB_RS23235at 1180.701 kb on - strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.718 kb on + strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235at 1180.719 kb on - strand, within AMB_RS23235

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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1,177,301 + AMB_RS05630 0.71 -0.9
1,177,301 + AMB_RS05630 0.71 -1.4
1,177,302 - AMB_RS05630 0.71 +0.8
1,177,527 - AMB_RS05630 0.81 -1.0
1,177,637 + AMB_RS05630 0.86 -0.2
1,177,638 - AMB_RS05630 0.86 -0.2
1,177,650 - AMB_RS05630 0.86 -0.1
1,177,672 - AMB_RS05630 0.87 -0.4
1,177,991 - +0.4
1,177,991 - -0.4
1,177,991 - +0.2
1,178,029 + -1.3
1,178,030 - -0.1
1,178,125 + +0.3
1,178,126 - +0.4
1,178,137 + -0.5
1,178,138 - -1.3
1,178,138 - -0.8
1,178,154 - -1.0
1,178,167 - -0.4
1,178,321 + -0.0
1,178,322 - +0.5
1,178,404 + AMB_RS24005 0.13 -1.0
1,178,404 + AMB_RS24005 0.13 -0.8
1,178,404 + AMB_RS24005 0.13 +0.0
1,178,404 + AMB_RS24005 0.13 +0.7
1,178,404 + AMB_RS24005 0.13 +1.2
1,178,405 - AMB_RS24005 0.13 +0.2
1,178,405 - AMB_RS24005 0.13 -0.6
1,178,405 - AMB_RS24005 0.13 -0.5
1,178,405 - AMB_RS24005 0.13 +0.3
1,178,405 - AMB_RS24005 0.13 +0.3
1,178,405 - AMB_RS24005 0.13 -0.6
1,178,405 - AMB_RS24005 0.13 -0.1
1,178,405 - AMB_RS24005 0.13 +0.4
1,178,405 - AMB_RS24005 0.13 -0.2
1,178,405 - AMB_RS24005 0.13 -0.3
1,178,405 - AMB_RS24005 0.13 -0.3
1,178,405 - AMB_RS24005 0.13 -0.4
1,178,405 - AMB_RS24005 0.13 -1.5
1,178,407 - AMB_RS24005 0.13 -0.1
1,178,407 - AMB_RS24005 0.13 -0.1
1,178,407 - AMB_RS24005 0.13 -0.2
1,178,407 - AMB_RS24005 0.13 +1.3
1,178,407 - AMB_RS24005 0.13 +0.2
1,178,407 - AMB_RS24005 0.13 +0.2
1,178,700 - AMB_RS24005 0.32 -0.2
1,178,700 - AMB_RS24005 0.32 -0.1
1,178,715 - AMB_RS24005 0.33 -2.4
1,178,971 + AMB_RS24005 0.50 -1.4
1,179,059 + AMB_RS24005 0.56 -0.7
1,179,059 + AMB_RS24005 0.56 -0.8
1,179,059 + AMB_RS24005 0.56 +0.5
1,179,060 - AMB_RS24005 0.56 +0.0
1,179,060 - AMB_RS24005 0.56 -0.4
1,179,107 + AMB_RS24005 0.59 +0.6
1,179,196 + AMB_RS24005 0.65 -0.2
1,179,196 + AMB_RS24005 0.65 -0.1
1,179,196 + AMB_RS24005 0.65 -0.3
1,179,197 - AMB_RS24005 0.65 -1.2
1,179,197 - AMB_RS24005 0.65 -1.5
1,179,197 - AMB_RS24005 0.65 -0.1
1,179,197 - AMB_RS24005 0.65 -0.4
1,179,197 - AMB_RS24005 0.65 -0.0
1,179,197 - AMB_RS24005 0.65 -2.5
1,179,197 - AMB_RS24005 0.65 -0.2
1,179,426 - AMB_RS24005 0.80 -0.0
1,179,426 - AMB_RS24005 0.80 -0.5
1,179,426 - AMB_RS24005 0.80 -0.2
1,179,534 - AMB_RS24005 0.87 +1.3
1,179,751 + -0.2
1,179,751 + -1.3
1,179,752 - +0.3
1,179,752 - -0.0
1,179,850 - +0.8
1,179,850 - -0.9
1,179,900 + -0.3
1,179,900 + +0.4
1,179,900 + -2.0
1,179,901 - +0.4
1,179,901 - -1.7
1,179,901 - +0.5
1,179,901 - -0.2
1,179,901 - -0.6
1,179,956 - -0.5
1,180,055 + -0.3
1,180,056 - +1.7
1,180,056 - -0.0
1,180,163 + -1.7
1,180,163 + -0.1
1,180,163 + +0.2
1,180,163 + -0.6
1,180,163 + -0.8
1,180,163 + +0.9
1,180,163 + -1.7
1,180,163 + -0.2
1,180,164 - +1.0
1,180,164 - +0.1
1,180,164 - +1.0
1,180,164 - -0.6
1,180,164 - -0.2
1,180,271 + AMB_RS23235 0.13 -0.1
1,180,271 + AMB_RS23235 0.13 -0.0
1,180,272 - AMB_RS23235 0.13 -0.2
1,180,338 - AMB_RS23235 0.15 +1.3
1,180,682 + AMB_RS23235 0.27 -0.0
1,180,683 - AMB_RS23235 0.27 -0.2
1,180,701 - AMB_RS23235 0.28 +0.7
1,180,718 + AMB_RS23235 0.28 -0.3
1,180,718 + AMB_RS23235 0.28 -0.3
1,180,718 + AMB_RS23235 0.28 -0.3
1,180,718 + AMB_RS23235 0.28 +0.0
1,180,718 + AMB_RS23235 0.28 +0.4
1,180,718 + AMB_RS23235 0.28 -0.2
1,180,718 + AMB_RS23235 0.28 -0.7
1,180,719 - AMB_RS23235 0.28 -0.5
1,180,719 - AMB_RS23235 0.28 -0.4
1,180,719 - AMB_RS23235 0.28 -0.5
1,180,719 - AMB_RS23235 0.28 -1.3
1,180,719 - AMB_RS23235 0.28 -2.8
1,180,719 - AMB_RS23235 0.28 +0.3

Or see this region's nucleotide sequence