Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22280

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22270 and AMB_RS22275 are separated by 135 nucleotidesAMB_RS22275 and AMB_RS22280 are separated by 20 nucleotidesAMB_RS22280 and AMB_RS22285 overlap by 1 nucleotides AMB_RS22270: AMB_RS22270 - NifU family protein, at 4,807,794 to 4,808,342 _RS22270 AMB_RS22275: AMB_RS22275 - universal stress protein, at 4,808,478 to 4,808,945 _RS22275 AMB_RS22280: AMB_RS22280 - hypothetical protein, at 4,808,966 to 4,809,715 _RS22280 AMB_RS22285: AMB_RS22285 - sulfite exporter TauE/SafE family protein, at 4,809,715 to 4,810,641 _RS22285 Position (kb) 4808 4809 4810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4808.086 kb on + strand, within AMB_RS22270at 4808.086 kb on + strand, within AMB_RS22270at 4808.087 kb on - strand, within AMB_RS22270at 4808.087 kb on - strand, within AMB_RS22270at 4808.087 kb on - strand, within AMB_RS22270at 4808.379 kb on + strandat 4808.379 kb on + strandat 4808.380 kb on - strandat 4808.382 kb on + strandat 4808.383 kb on - strandat 4808.383 kb on - strandat 4808.383 kb on - strandat 4808.383 kb on - strandat 4808.383 kb on - strandat 4808.397 kb on - strandat 4808.397 kb on - strandat 4808.474 kb on + strandat 4808.474 kb on + strandat 4808.474 kb on + strandat 4808.475 kb on - strandat 4808.479 kb on + strandat 4808.479 kb on + strandat 4808.479 kb on + strandat 4808.480 kb on - strandat 4808.480 kb on - strandat 4808.552 kb on + strand, within AMB_RS22275at 4808.554 kb on + strand, within AMB_RS22275at 4808.555 kb on - strand, within AMB_RS22275at 4808.555 kb on - strand, within AMB_RS22275at 4808.555 kb on - strand, within AMB_RS22275at 4808.555 kb on - strand, within AMB_RS22275at 4808.555 kb on - strand, within AMB_RS22275at 4808.646 kb on - strand, within AMB_RS22275at 4808.809 kb on + strand, within AMB_RS22275at 4808.809 kb on + strand, within AMB_RS22275at 4808.810 kb on - strand, within AMB_RS22275at 4809.147 kb on + strand, within AMB_RS22280at 4809.147 kb on + strand, within AMB_RS22280at 4809.148 kb on - strand, within AMB_RS22280at 4809.148 kb on - strand, within AMB_RS22280at 4809.148 kb on - strand, within AMB_RS22280at 4809.160 kb on + strand, within AMB_RS22280at 4809.160 kb on + strand, within AMB_RS22280at 4809.161 kb on - strand, within AMB_RS22280at 4809.161 kb on - strand, within AMB_RS22280at 4809.161 kb on - strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.162 kb on + strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.163 kb on - strand, within AMB_RS22280at 4809.423 kb on + strand, within AMB_RS22280at 4809.424 kb on - strand, within AMB_RS22280at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.022 kb on + strand, within AMB_RS22285at 4810.023 kb on - strand, within AMB_RS22285at 4810.023 kb on - strand, within AMB_RS22285at 4810.023 kb on - strand, within AMB_RS22285at 4810.023 kb on - strand, within AMB_RS22285at 4810.122 kb on + strand, within AMB_RS22285at 4810.123 kb on - strand, within AMB_RS22285at 4810.124 kb on + strand, within AMB_RS22285at 4810.124 kb on + strand, within AMB_RS22285at 4810.124 kb on + strand, within AMB_RS22285at 4810.125 kb on - strand, within AMB_RS22285at 4810.289 kb on + strand, within AMB_RS22285at 4810.289 kb on + strand, within AMB_RS22285at 4810.290 kb on - strand, within AMB_RS22285at 4810.290 kb on - strand, within AMB_RS22285at 4810.346 kb on + strand, within AMB_RS22285at 4810.346 kb on + strand, within AMB_RS22285at 4810.347 kb on - strand, within AMB_RS22285at 4810.347 kb on - strand, within AMB_RS22285at 4810.347 kb on - strand, within AMB_RS22285at 4810.347 kb on - strand, within AMB_RS22285at 4810.631 kb on + strandat 4810.632 kb on - strandat 4810.632 kb on - strandat 4810.632 kb on - strandat 4810.632 kb on - strandat 4810.632 kb on - strandat 4810.632 kb on - strandat 4810.683 kb on + strandat 4810.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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4,808,086 + AMB_RS22270 0.53 -0.5
4,808,086 + AMB_RS22270 0.53 +0.4
4,808,087 - AMB_RS22270 0.53 -1.6
4,808,087 - AMB_RS22270 0.53 -0.6
4,808,087 - AMB_RS22270 0.53 -2.5
4,808,379 + -1.6
4,808,379 + -2.3
4,808,380 - -0.2
4,808,382 + -1.2
4,808,383 - +0.4
4,808,383 - -0.6
4,808,383 - +0.1
4,808,383 - -0.5
4,808,383 - -0.1
4,808,397 - -3.1
4,808,397 - -1.3
4,808,474 + +0.4
4,808,474 + -1.6
4,808,474 + -0.5
4,808,475 - +0.6
4,808,479 + +0.0
4,808,479 + -1.2
4,808,479 + +0.6
4,808,480 - -0.4
4,808,480 - -1.6
4,808,552 + AMB_RS22275 0.16 -0.5
4,808,554 + AMB_RS22275 0.16 +2.4
4,808,555 - AMB_RS22275 0.16 -0.3
4,808,555 - AMB_RS22275 0.16 +0.8
4,808,555 - AMB_RS22275 0.16 +1.4
4,808,555 - AMB_RS22275 0.16 -2.2
4,808,555 - AMB_RS22275 0.16 -0.5
4,808,646 - AMB_RS22275 0.36 +0.4
4,808,809 + AMB_RS22275 0.71 +0.7
4,808,809 + AMB_RS22275 0.71 -0.5
4,808,810 - AMB_RS22275 0.71 +0.3
4,809,147 + AMB_RS22280 0.24 -0.6
4,809,147 + AMB_RS22280 0.24 +0.1
4,809,148 - AMB_RS22280 0.24 +0.0
4,809,148 - AMB_RS22280 0.24 +0.6
4,809,148 - AMB_RS22280 0.24 -0.0
4,809,160 + AMB_RS22280 0.26 -2.5
4,809,160 + AMB_RS22280 0.26 +2.7
4,809,161 - AMB_RS22280 0.26 -0.1
4,809,161 - AMB_RS22280 0.26 -1.1
4,809,161 - AMB_RS22280 0.26 +0.5
4,809,162 + AMB_RS22280 0.26 -0.2
4,809,162 + AMB_RS22280 0.26 +0.0
4,809,162 + AMB_RS22280 0.26 +0.4
4,809,162 + AMB_RS22280 0.26 +0.3
4,809,162 + AMB_RS22280 0.26 +0.1
4,809,162 + AMB_RS22280 0.26 -0.1
4,809,162 + AMB_RS22280 0.26 +0.2
4,809,163 - AMB_RS22280 0.26 -0.2
4,809,163 - AMB_RS22280 0.26 -0.1
4,809,163 - AMB_RS22280 0.26 +0.0
4,809,163 - AMB_RS22280 0.26 -0.6
4,809,163 - AMB_RS22280 0.26 -0.0
4,809,163 - AMB_RS22280 0.26 +0.2
4,809,423 + AMB_RS22280 0.61 -0.3
4,809,424 - AMB_RS22280 0.61 +1.6
4,810,022 + AMB_RS22285 0.33 -0.3
4,810,022 + AMB_RS22285 0.33 -0.3
4,810,022 + AMB_RS22285 0.33 -0.6
4,810,022 + AMB_RS22285 0.33 +0.0
4,810,022 + AMB_RS22285 0.33 +0.0
4,810,022 + AMB_RS22285 0.33 +0.7
4,810,022 + AMB_RS22285 0.33 -0.2
4,810,023 - AMB_RS22285 0.33 +0.1
4,810,023 - AMB_RS22285 0.33 -1.0
4,810,023 - AMB_RS22285 0.33 -0.1
4,810,023 - AMB_RS22285 0.33 -0.5
4,810,122 + AMB_RS22285 0.44 +0.6
4,810,123 - AMB_RS22285 0.44 +0.5
4,810,124 + AMB_RS22285 0.44 -0.2
4,810,124 + AMB_RS22285 0.44 +0.2
4,810,124 + AMB_RS22285 0.44 -0.1
4,810,125 - AMB_RS22285 0.44 -0.8
4,810,289 + AMB_RS22285 0.62 +0.1
4,810,289 + AMB_RS22285 0.62 -0.5
4,810,290 - AMB_RS22285 0.62 -0.1
4,810,290 - AMB_RS22285 0.62 +1.0
4,810,346 + AMB_RS22285 0.68 +0.2
4,810,346 + AMB_RS22285 0.68 -0.3
4,810,347 - AMB_RS22285 0.68 +0.3
4,810,347 - AMB_RS22285 0.68 -0.8
4,810,347 - AMB_RS22285 0.68 -0.3
4,810,347 - AMB_RS22285 0.68 -0.6
4,810,631 + -0.1
4,810,632 - -0.3
4,810,632 - -0.6
4,810,632 - +0.1
4,810,632 - -0.2
4,810,632 - -0.1
4,810,632 - +0.0
4,810,683 + -0.0
4,810,684 - +0.4

Or see this region's nucleotide sequence