Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21975

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21970 and AMB_RS21975 are separated by 135 nucleotidesAMB_RS21975 and AMB_RS21980 are separated by 128 nucleotides AMB_RS21970: AMB_RS21970 - molecular chaperone HtpG, at 4,747,116 to 4,748,987 _RS21970 AMB_RS21975: AMB_RS21975 - GGDEF domain-containing protein, at 4,749,123 to 4,750,190 _RS21975 AMB_RS21980: AMB_RS21980 - prenyltransferase, at 4,750,319 to 4,751,266 _RS21980 Position (kb) 4749 4750 4751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.196 kb on + strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.197 kb on - strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.244 kb on + strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.245 kb on - strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.331 kb on + strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.332 kb on - strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on + strand, within AMB_RS21970at 4748.367 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.368 kb on - strand, within AMB_RS21970at 4748.499 kb on + strand, within AMB_RS21970at 4748.499 kb on + strand, within AMB_RS21970at 4748.499 kb on + strand, within AMB_RS21970at 4748.499 kb on + strand, within AMB_RS21970at 4748.500 kb on - strand, within AMB_RS21970at 4748.759 kb on + strand, within AMB_RS21970at 4748.760 kb on - strand, within AMB_RS21970at 4748.760 kb on - strand, within AMB_RS21970at 4748.760 kb on - strand, within AMB_RS21970at 4748.985 kb on + strandat 4748.985 kb on + strandat 4748.985 kb on + strandat 4748.986 kb on - strandat 4748.986 kb on - strandat 4748.998 kb on + strandat 4748.998 kb on + strandat 4748.999 kb on - strandat 4749.108 kb on - strandat 4749.124 kb on + strandat 4749.125 kb on - strandat 4749.170 kb on - strandat 4749.395 kb on + strand, within AMB_RS21975at 4749.396 kb on - strand, within AMB_RS21975at 4749.396 kb on - strand, within AMB_RS21975at 4749.396 kb on - strand, within AMB_RS21975at 4749.400 kb on + strand, within AMB_RS21975at 4749.871 kb on + strand, within AMB_RS21975at 4749.871 kb on + strand, within AMB_RS21975at 4749.871 kb on + strand, within AMB_RS21975at 4749.871 kb on + strand, within AMB_RS21975at 4749.872 kb on - strand, within AMB_RS21975at 4749.872 kb on - strand, within AMB_RS21975at 4750.281 kb on + strandat 4750.281 kb on + strandat 4750.282 kb on - strandat 4750.778 kb on + strand, within AMB_RS21980at 4750.779 kb on - strand, within AMB_RS21980at 4750.779 kb on - strand, within AMB_RS21980at 4750.905 kb on + strand, within AMB_RS21980at 4750.906 kb on - strand, within AMB_RS21980at 4751.039 kb on + strand, within AMB_RS21980at 4751.039 kb on + strand, within AMB_RS21980at 4751.039 kb on + strand, within AMB_RS21980at 4751.040 kb on - strand, within AMB_RS21980

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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4,748,196 + AMB_RS21970 0.58 -0.3
4,748,196 + AMB_RS21970 0.58 -0.2
4,748,196 + AMB_RS21970 0.58 -0.0
4,748,196 + AMB_RS21970 0.58 +0.3
4,748,196 + AMB_RS21970 0.58 +0.7
4,748,196 + AMB_RS21970 0.58 +0.3
4,748,196 + AMB_RS21970 0.58 -1.5
4,748,196 + AMB_RS21970 0.58 +0.2
4,748,196 + AMB_RS21970 0.58 -0.2
4,748,196 + AMB_RS21970 0.58 -1.1
4,748,196 + AMB_RS21970 0.58 +0.2
4,748,196 + AMB_RS21970 0.58 -0.8
4,748,196 + AMB_RS21970 0.58 -0.1
4,748,196 + AMB_RS21970 0.58 +0.4
4,748,196 + AMB_RS21970 0.58 +0.1
4,748,196 + AMB_RS21970 0.58 -0.6
4,748,196 + AMB_RS21970 0.58 +0.2
4,748,197 - AMB_RS21970 0.58 -1.7
4,748,197 - AMB_RS21970 0.58 -0.5
4,748,197 - AMB_RS21970 0.58 -0.1
4,748,197 - AMB_RS21970 0.58 +0.0
4,748,197 - AMB_RS21970 0.58 +0.2
4,748,197 - AMB_RS21970 0.58 -0.4
4,748,197 - AMB_RS21970 0.58 -0.1
4,748,197 - AMB_RS21970 0.58 -0.3
4,748,197 - AMB_RS21970 0.58 -0.1
4,748,197 - AMB_RS21970 0.58 -0.9
4,748,197 - AMB_RS21970 0.58 +0.4
4,748,197 - AMB_RS21970 0.58 +0.3
4,748,197 - AMB_RS21970 0.58 -0.2
4,748,197 - AMB_RS21970 0.58 -0.5
4,748,197 - AMB_RS21970 0.58 -0.7
4,748,197 - AMB_RS21970 0.58 +0.3
4,748,197 - AMB_RS21970 0.58 -0.3
4,748,197 - AMB_RS21970 0.58 +0.4
4,748,197 - AMB_RS21970 0.58 +0.3
4,748,197 - AMB_RS21970 0.58 -0.0
4,748,197 - AMB_RS21970 0.58 -0.6
4,748,197 - AMB_RS21970 0.58 -0.3
4,748,197 - AMB_RS21970 0.58 -0.1
4,748,244 + AMB_RS21970 0.60 -1.0
4,748,244 + AMB_RS21970 0.60 -1.1
4,748,244 + AMB_RS21970 0.60 -0.4
4,748,244 + AMB_RS21970 0.60 +0.6
4,748,244 + AMB_RS21970 0.60 -3.7
4,748,244 + AMB_RS21970 0.60 +0.1
4,748,244 + AMB_RS21970 0.60 -0.2
4,748,244 + AMB_RS21970 0.60 -0.0
4,748,244 + AMB_RS21970 0.60 +1.9
4,748,244 + AMB_RS21970 0.60 -0.1
4,748,244 + AMB_RS21970 0.60 +0.1
4,748,244 + AMB_RS21970 0.60 -0.2
4,748,244 + AMB_RS21970 0.60 -0.1
4,748,244 + AMB_RS21970 0.60 +0.2
4,748,244 + AMB_RS21970 0.60 +0.0
4,748,244 + AMB_RS21970 0.60 -1.0
4,748,245 - AMB_RS21970 0.60 +0.5
4,748,245 - AMB_RS21970 0.60 -1.6
4,748,245 - AMB_RS21970 0.60 -0.1
4,748,245 - AMB_RS21970 0.60 +0.6
4,748,245 - AMB_RS21970 0.60 -2.6
4,748,245 - AMB_RS21970 0.60 -1.5
4,748,245 - AMB_RS21970 0.60 -0.2
4,748,331 + AMB_RS21970 0.65 -0.1
4,748,331 + AMB_RS21970 0.65 +0.4
4,748,331 + AMB_RS21970 0.65 +0.1
4,748,331 + AMB_RS21970 0.65 +0.1
4,748,331 + AMB_RS21970 0.65 +1.9
4,748,331 + AMB_RS21970 0.65 -0.3
4,748,331 + AMB_RS21970 0.65 -0.3
4,748,332 - AMB_RS21970 0.65 -0.0
4,748,332 - AMB_RS21970 0.65 +0.2
4,748,332 - AMB_RS21970 0.65 -0.4
4,748,332 - AMB_RS21970 0.65 +0.9
4,748,332 - AMB_RS21970 0.65 -1.2
4,748,332 - AMB_RS21970 0.65 -0.9
4,748,332 - AMB_RS21970 0.65 -0.6
4,748,332 - AMB_RS21970 0.65 +0.1
4,748,332 - AMB_RS21970 0.65 -0.6
4,748,332 - AMB_RS21970 0.65 -0.1
4,748,332 - AMB_RS21970 0.65 -0.1
4,748,332 - AMB_RS21970 0.65 -1.2
4,748,332 - AMB_RS21970 0.65 -0.2
4,748,367 + AMB_RS21970 0.67 -1.0
4,748,367 + AMB_RS21970 0.67 -0.4
4,748,367 + AMB_RS21970 0.67 -0.0
4,748,367 + AMB_RS21970 0.67 -0.2
4,748,367 + AMB_RS21970 0.67 +0.1
4,748,367 + AMB_RS21970 0.67 -0.2
4,748,367 + AMB_RS21970 0.67 -0.2
4,748,367 + AMB_RS21970 0.67 -0.6
4,748,367 + AMB_RS21970 0.67 -0.3
4,748,367 + AMB_RS21970 0.67 +0.8
4,748,367 + AMB_RS21970 0.67 -0.0
4,748,367 + AMB_RS21970 0.67 +0.6
4,748,367 + AMB_RS21970 0.67 -2.0
4,748,367 + AMB_RS21970 0.67 +0.1
4,748,367 + AMB_RS21970 0.67 +0.4
4,748,367 + AMB_RS21970 0.67 -0.1
4,748,367 + AMB_RS21970 0.67 -1.5
4,748,367 + AMB_RS21970 0.67 -1.2
4,748,367 + AMB_RS21970 0.67 +0.0
4,748,367 + AMB_RS21970 0.67 -0.4
4,748,367 + AMB_RS21970 0.67 +0.0
4,748,367 + AMB_RS21970 0.67 +0.2
4,748,367 + AMB_RS21970 0.67 -1.4
4,748,367 + AMB_RS21970 0.67 +0.1
4,748,367 + AMB_RS21970 0.67 -0.3
4,748,367 + AMB_RS21970 0.67 +0.6
4,748,367 + AMB_RS21970 0.67 +0.5
4,748,367 + AMB_RS21970 0.67 -0.4
4,748,367 + AMB_RS21970 0.67 -0.5
4,748,367 - AMB_RS21970 0.67 +1.0
4,748,368 - AMB_RS21970 0.67 +1.2
4,748,368 - AMB_RS21970 0.67 -0.6
4,748,368 - AMB_RS21970 0.67 -0.2
4,748,368 - AMB_RS21970 0.67 -0.7
4,748,368 - AMB_RS21970 0.67 -0.3
4,748,368 - AMB_RS21970 0.67 -2.6
4,748,368 - AMB_RS21970 0.67 +0.1
4,748,368 - AMB_RS21970 0.67 -0.5
4,748,368 - AMB_RS21970 0.67 +0.2
4,748,368 - AMB_RS21970 0.67 -0.0
4,748,368 - AMB_RS21970 0.67 -0.8
4,748,368 - AMB_RS21970 0.67 -3.0
4,748,368 - AMB_RS21970 0.67 -0.8
4,748,368 - AMB_RS21970 0.67 -0.8
4,748,368 - AMB_RS21970 0.67 +0.2
4,748,368 - AMB_RS21970 0.67 +0.4
4,748,368 - AMB_RS21970 0.67 -0.2
4,748,368 - AMB_RS21970 0.67 -0.1
4,748,499 + AMB_RS21970 0.74 -0.4
4,748,499 + AMB_RS21970 0.74 +0.0
4,748,499 + AMB_RS21970 0.74 -1.0
4,748,499 + AMB_RS21970 0.74 -0.2
4,748,500 - AMB_RS21970 0.74 +1.1
4,748,759 + AMB_RS21970 0.88 -2.0
4,748,760 - AMB_RS21970 0.88 -0.6
4,748,760 - AMB_RS21970 0.88 +0.5
4,748,760 - AMB_RS21970 0.88 -0.7
4,748,985 + -2.0
4,748,985 + -0.3
4,748,985 + -0.2
4,748,986 - +0.1
4,748,986 - -0.3
4,748,998 + +1.2
4,748,998 + -0.3
4,748,999 - +1.0
4,749,108 - -0.3
4,749,124 + -1.6
4,749,125 - +0.9
4,749,170 - -0.5
4,749,395 + AMB_RS21975 0.25 -0.5
4,749,396 - AMB_RS21975 0.26 -0.2
4,749,396 - AMB_RS21975 0.26 -0.5
4,749,396 - AMB_RS21975 0.26 -0.7
4,749,400 + AMB_RS21975 0.26 -0.8
4,749,871 + AMB_RS21975 0.70 -0.4
4,749,871 + AMB_RS21975 0.70 -0.4
4,749,871 + AMB_RS21975 0.70 +0.9
4,749,871 + AMB_RS21975 0.70 +0.8
4,749,872 - AMB_RS21975 0.70 -0.0
4,749,872 - AMB_RS21975 0.70 -1.2
4,750,281 + -0.6
4,750,281 + -0.5
4,750,282 - -2.2
4,750,778 + AMB_RS21980 0.48 -1.2
4,750,779 - AMB_RS21980 0.49 -0.3
4,750,779 - AMB_RS21980 0.49 -0.6
4,750,905 + AMB_RS21980 0.62 -0.2
4,750,906 - AMB_RS21980 0.62 -0.0
4,751,039 + AMB_RS21980 0.76 -0.9
4,751,039 + AMB_RS21980 0.76 -0.8
4,751,039 + AMB_RS21980 0.76 +1.0
4,751,040 - AMB_RS21980 0.76 -0.1

Or see this region's nucleotide sequence