Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21060 and AMB_RS21065 overlap by 4 nucleotides AMB_RS21065 and AMB_RS21070 are separated by 59 nucleotides AMB_RS21070 and AMB_RS21075 are separated by 154 nucleotides
AMB_RS21060: AMB_RS21060 - MoxR family ATPase, at 4,574,018 to 4,575,010
_RS21060
AMB_RS21065: AMB_RS21065 - double-strand break repair helicase AddA, at 4,575,007 to 4,578,471
_RS21065
AMB_RS21070: AMB_RS21070 - TetR family transcriptional regulator, at 4,578,531 to 4,579,139
_RS21070
AMB_RS21075: AMB_RS21075 - methyl-accepting chemotaxis protein, at 4,579,294 to 4,581,015
_RS21075
Position (kb) 4575
4576
4577
4578
4579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4574.146 kb on + strand, within AMB_RS21060 at 4574.358 kb on + strand, within AMB_RS21060 at 4575.006 kb on + strand at 4575.120 kb on - strand at 4576.189 kb on + strand, within AMB_RS21065 at 4577.159 kb on - strand, within AMB_RS21065 at 4578.269 kb on - strand at 4578.319 kb on + strand at 4578.509 kb on + strand at 4578.618 kb on + strand, within AMB_RS21070 at 4578.619 kb on - strand, within AMB_RS21070 at 4578.644 kb on - strand, within AMB_RS21070 at 4578.678 kb on + strand, within AMB_RS21070 at 4578.679 kb on - strand, within AMB_RS21070 at 4578.679 kb on - strand, within AMB_RS21070 at 4578.679 kb on - strand, within AMB_RS21070 at 4578.679 kb on - strand, within AMB_RS21070 at 4578.798 kb on + strand, within AMB_RS21070 at 4578.798 kb on + strand, within AMB_RS21070 at 4578.798 kb on + strand, within AMB_RS21070 at 4578.798 kb on + strand, within AMB_RS21070 at 4578.798 kb on + strand, within AMB_RS21070 at 4578.799 kb on - strand, within AMB_RS21070 at 4578.903 kb on + strand, within AMB_RS21070 at 4578.904 kb on - strand, within AMB_RS21070 at 4579.041 kb on + strand, within AMB_RS21070 at 4579.041 kb on + strand, within AMB_RS21070 at 4579.042 kb on - strand, within AMB_RS21070 at 4579.138 kb on - strand at 4579.138 kb on - strand at 4579.465 kb on + strand at 4579.465 kb on + strand at 4579.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 4,574,146 + AMB_RS21060 0.13 +0.5 4,574,358 + AMB_RS21060 0.34 -0.2 4,575,006 + +0.1 4,575,120 - +0.4 4,576,189 + AMB_RS21065 0.34 +0.4 4,577,159 - AMB_RS21065 0.62 -1.2 4,578,269 - -0.6 4,578,319 + +0.4 4,578,509 + -0.4 4,578,618 + AMB_RS21070 0.14 -0.1 4,578,619 - AMB_RS21070 0.14 +1.2 4,578,644 - AMB_RS21070 0.19 -0.2 4,578,678 + AMB_RS21070 0.24 +0.9 4,578,679 - AMB_RS21070 0.24 +0.8 4,578,679 - AMB_RS21070 0.24 -0.2 4,578,679 - AMB_RS21070 0.24 -1.2 4,578,679 - AMB_RS21070 0.24 +0.5 4,578,798 + AMB_RS21070 0.44 -0.5 4,578,798 + AMB_RS21070 0.44 +0.7 4,578,798 + AMB_RS21070 0.44 -0.6 4,578,798 + AMB_RS21070 0.44 -0.6 4,578,798 + AMB_RS21070 0.44 -0.4 4,578,799 - AMB_RS21070 0.44 +0.1 4,578,903 + AMB_RS21070 0.61 -1.1 4,578,904 - AMB_RS21070 0.61 -1.8 4,579,041 + AMB_RS21070 0.84 +0.4 4,579,041 + AMB_RS21070 0.84 +0.4 4,579,042 - AMB_RS21070 0.84 +0.4 4,579,138 - -0.7 4,579,138 - +0.0 4,579,465 + -1.6 4,579,465 + -4.2 4,579,466 - -0.6
Or see this region's nucleotide sequence