Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19755 and AMB_RS19760 are separated by 139 nucleotides AMB_RS19760 and AMB_RS19765 are separated by 99 nucleotides AMB_RS19765 and AMB_RS19770 are separated by 98 nucleotides
AMB_RS19755: AMB_RS19755 - electron transfer flavoprotein subunit alpha, at 4,318,572 to 4,319,507
_RS19755
AMB_RS19760: AMB_RS19760 - electron transfer flavoprotein subunit beta/FixA family protein, at 4,319,647 to 4,320,396
_RS19760
AMB_RS19765: AMB_RS19765 - ATP:cob(I)alamin adenosyltransferase, at 4,320,496 to 4,321,062
_RS19765
AMB_RS19770: AMB_RS19770 - LPS export ABC transporter permease LptG, at 4,321,161 to 4,322,264
_RS19770
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -1
0
1 at 4320.359 kb on + strand at 4320.460 kb on + strand at 4320.475 kb on + strand at 4320.475 kb on + strand at 4320.475 kb on + strand at 4320.593 kb on + strand, within AMB_RS19765 at 4321.040 kb on + strand at 4321.095 kb on + strand at 4321.121 kb on + strand at 4321.123 kb on + strand at 4321.123 kb on + strand at 4321.123 kb on + strand at 4321.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 4,320,359 + -0.4 4,320,460 + -0.6 4,320,475 + -0.1 4,320,475 + -0.0 4,320,475 + -0.1 4,320,593 + AMB_RS19765 0.17 -0.2 4,321,040 + -0.6 4,321,095 + -0.0 4,321,121 + +0.1 4,321,123 + -0.9 4,321,123 + -0.0 4,321,123 + -1.3 4,321,123 + -0.2
Or see this region's nucleotide sequence