Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19260 and AMB_RS19265 are separated by 101 nucleotides AMB_RS19265 and AMB_RS19270 are separated by 200 nucleotides AMB_RS19270 and AMB_RS19275 overlap by 23 nucleotides AMB_RS19275 and AMB_RS19280 overlap by 1 nucleotides
AMB_RS19260: AMB_RS19260 - HAMP domain-containing protein, at 4,202,131 to 4,204,197
_RS19260
AMB_RS19265: AMB_RS19265 - RNA pseudouridine synthase, at 4,204,299 to 4,204,988
_RS19265
AMB_RS19270: AMB_RS19270 - spore coat polysaccharide biosynthesis protein F, at 4,205,189 to 4,205,920
_RS19270
AMB_RS19275: AMB_RS19275 - gfo/Idh/MocA family oxidoreductase, at 4,205,898 to 4,206,887
_RS19275
AMB_RS19280: AMB_RS19280 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 4,206,887 to 4,208,206
_RS19280
Position (kb) 4205
4206 Strain fitness (log2 ratio) -2
-1
0
1 at 4204.251 kb on - strand at 4204.265 kb on - strand at 4204.459 kb on + strand, within AMB_RS19265 at 4204.460 kb on - strand, within AMB_RS19265 at 4204.463 kb on - strand, within AMB_RS19265 at 4204.463 kb on - strand, within AMB_RS19265 at 4204.463 kb on - strand, within AMB_RS19265 at 4204.492 kb on + strand, within AMB_RS19265 at 4204.493 kb on - strand, within AMB_RS19265 at 4204.714 kb on + strand, within AMB_RS19265 at 4204.715 kb on - strand, within AMB_RS19265 at 4204.715 kb on - strand, within AMB_RS19265 at 4204.802 kb on + strand, within AMB_RS19265 at 4204.802 kb on + strand, within AMB_RS19265 at 4204.867 kb on + strand, within AMB_RS19265 at 4204.868 kb on - strand, within AMB_RS19265 at 4204.868 kb on - strand, within AMB_RS19265 at 4204.954 kb on + strand at 4205.127 kb on - strand at 4205.127 kb on - strand at 4205.137 kb on + strand at 4205.555 kb on + strand, within AMB_RS19270 at 4205.555 kb on + strand, within AMB_RS19270 at 4205.555 kb on + strand, within AMB_RS19270 at 4205.555 kb on + strand, within AMB_RS19270 at 4205.556 kb on - strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.681 kb on + strand, within AMB_RS19270 at 4205.682 kb on - strand, within AMB_RS19270 at 4205.682 kb on - strand, within AMB_RS19270 at 4205.682 kb on - strand, within AMB_RS19270 at 4205.682 kb on - strand, within AMB_RS19270 at 4205.683 kb on + strand, within AMB_RS19270 at 4205.683 kb on + strand, within AMB_RS19270 at 4205.683 kb on + strand, within AMB_RS19270 at 4205.684 kb on - strand, within AMB_RS19270 at 4205.684 kb on - strand, within AMB_RS19270 at 4205.687 kb on + strand, within AMB_RS19270 at 4205.687 kb on + strand, within AMB_RS19270 at 4205.687 kb on + strand, within AMB_RS19270 at 4205.687 kb on + strand, within AMB_RS19270 at 4205.688 kb on - strand, within AMB_RS19270 at 4205.688 kb on - strand, within AMB_RS19270 at 4205.705 kb on + strand, within AMB_RS19270 at 4205.706 kb on - strand, within AMB_RS19270 at 4205.706 kb on - strand, within AMB_RS19270 at 4205.783 kb on + strand, within AMB_RS19270 at 4205.783 kb on + strand, within AMB_RS19270 at 4205.783 kb on + strand, within AMB_RS19270 at 4206.018 kb on + strand, within AMB_RS19275 at 4206.019 kb on - strand, within AMB_RS19275 at 4206.019 kb on - strand, within AMB_RS19275 at 4206.145 kb on - strand, within AMB_RS19275 at 4206.285 kb on + strand, within AMB_RS19275 at 4206.285 kb on + strand, within AMB_RS19275 at 4206.286 kb on - strand, within AMB_RS19275 at 4206.286 kb on - strand, within AMB_RS19275 at 4206.286 kb on - strand, within AMB_RS19275 at 4206.318 kb on + strand, within AMB_RS19275 at 4206.318 kb on + strand, within AMB_RS19275 at 4206.319 kb on - strand, within AMB_RS19275 at 4206.408 kb on + strand, within AMB_RS19275 at 4206.408 kb on + strand, within AMB_RS19275 at 4206.409 kb on - strand, within AMB_RS19275 at 4206.409 kb on - strand, within AMB_RS19275 at 4206.409 kb on - strand, within AMB_RS19275 at 4206.754 kb on - strand, within AMB_RS19275
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 4,204,251 - -1.1 4,204,265 - -0.4 4,204,459 + AMB_RS19265 0.23 -0.4 4,204,460 - AMB_RS19265 0.23 +0.3 4,204,463 - AMB_RS19265 0.24 +0.1 4,204,463 - AMB_RS19265 0.24 +0.2 4,204,463 - AMB_RS19265 0.24 -1.5 4,204,492 + AMB_RS19265 0.28 -2.0 4,204,493 - AMB_RS19265 0.28 -0.1 4,204,714 + AMB_RS19265 0.60 +0.0 4,204,715 - AMB_RS19265 0.60 -0.7 4,204,715 - AMB_RS19265 0.60 -0.1 4,204,802 + AMB_RS19265 0.73 +0.1 4,204,802 + AMB_RS19265 0.73 -0.2 4,204,867 + AMB_RS19265 0.82 -0.8 4,204,868 - AMB_RS19265 0.82 -0.0 4,204,868 - AMB_RS19265 0.82 -1.3 4,204,954 + +0.3 4,205,127 - +0.7 4,205,127 - -0.1 4,205,137 + +0.0 4,205,555 + AMB_RS19270 0.50 -0.0 4,205,555 + AMB_RS19270 0.50 -1.1 4,205,555 + AMB_RS19270 0.50 -0.4 4,205,555 + AMB_RS19270 0.50 +1.7 4,205,556 - AMB_RS19270 0.50 -0.4 4,205,681 + AMB_RS19270 0.67 -0.9 4,205,681 + AMB_RS19270 0.67 +0.7 4,205,681 + AMB_RS19270 0.67 -0.7 4,205,681 + AMB_RS19270 0.67 -0.1 4,205,681 + AMB_RS19270 0.67 +0.8 4,205,681 + AMB_RS19270 0.67 +1.0 4,205,681 + AMB_RS19270 0.67 -0.4 4,205,682 - AMB_RS19270 0.67 +0.1 4,205,682 - AMB_RS19270 0.67 -0.9 4,205,682 - AMB_RS19270 0.67 +0.2 4,205,682 - AMB_RS19270 0.67 -0.1 4,205,683 + AMB_RS19270 0.67 -0.3 4,205,683 + AMB_RS19270 0.67 -1.4 4,205,683 + AMB_RS19270 0.67 +0.5 4,205,684 - AMB_RS19270 0.68 +0.1 4,205,684 - AMB_RS19270 0.68 -0.7 4,205,687 + AMB_RS19270 0.68 +0.2 4,205,687 + AMB_RS19270 0.68 -1.4 4,205,687 + AMB_RS19270 0.68 -0.5 4,205,687 + AMB_RS19270 0.68 -0.8 4,205,688 - AMB_RS19270 0.68 -0.5 4,205,688 - AMB_RS19270 0.68 -0.0 4,205,705 + AMB_RS19270 0.70 +0.4 4,205,706 - AMB_RS19270 0.71 -1.4 4,205,706 - AMB_RS19270 0.71 -0.7 4,205,783 + AMB_RS19270 0.81 +0.7 4,205,783 + AMB_RS19270 0.81 +0.0 4,205,783 + AMB_RS19270 0.81 -1.0 4,206,018 + AMB_RS19275 0.12 -0.7 4,206,019 - AMB_RS19275 0.12 -0.2 4,206,019 - AMB_RS19275 0.12 -0.1 4,206,145 - AMB_RS19275 0.25 +0.5 4,206,285 + AMB_RS19275 0.39 -0.3 4,206,285 + AMB_RS19275 0.39 -0.1 4,206,286 - AMB_RS19275 0.39 -0.5 4,206,286 - AMB_RS19275 0.39 +0.3 4,206,286 - AMB_RS19275 0.39 +0.5 4,206,318 + AMB_RS19275 0.42 +0.8 4,206,318 + AMB_RS19275 0.42 -0.2 4,206,319 - AMB_RS19275 0.43 -0.4 4,206,408 + AMB_RS19275 0.52 -0.2 4,206,408 + AMB_RS19275 0.52 -0.4 4,206,409 - AMB_RS19275 0.52 -0.2 4,206,409 - AMB_RS19275 0.52 +1.0 4,206,409 - AMB_RS19275 0.52 +0.5 4,206,754 - AMB_RS19275 0.86 -0.4
Or see this region's nucleotide sequence