Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19265

Experiment: 30_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19260 and AMB_RS19265 are separated by 101 nucleotidesAMB_RS19265 and AMB_RS19270 are separated by 200 nucleotidesAMB_RS19270 and AMB_RS19275 overlap by 23 nucleotides AMB_RS19260: AMB_RS19260 - HAMP domain-containing protein, at 4,202,131 to 4,204,197 _RS19260 AMB_RS19265: AMB_RS19265 - RNA pseudouridine synthase, at 4,204,299 to 4,204,988 _RS19265 AMB_RS19270: AMB_RS19270 - spore coat polysaccharide biosynthesis protein F, at 4,205,189 to 4,205,920 _RS19270 AMB_RS19275: AMB_RS19275 - gfo/Idh/MocA family oxidoreductase, at 4,205,898 to 4,206,887 _RS19275 Position (kb) 4204 4205Strain fitness (log2 ratio) -2 -1 0 1at 4203.383 kb on + strand, within AMB_RS19260at 4203.384 kb on - strand, within AMB_RS19260at 4203.605 kb on - strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4204.113 kb on + strandat 4204.251 kb on - strandat 4204.265 kb on - strandat 4204.459 kb on + strand, within AMB_RS19265at 4204.460 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.492 kb on + strand, within AMB_RS19265at 4204.493 kb on - strand, within AMB_RS19265at 4204.714 kb on + strand, within AMB_RS19265at 4204.715 kb on - strand, within AMB_RS19265at 4204.715 kb on - strand, within AMB_RS19265at 4204.802 kb on + strand, within AMB_RS19265at 4204.802 kb on + strand, within AMB_RS19265at 4204.867 kb on + strand, within AMB_RS19265at 4204.868 kb on - strand, within AMB_RS19265at 4204.868 kb on - strand, within AMB_RS19265at 4204.954 kb on + strandat 4205.127 kb on - strandat 4205.127 kb on - strandat 4205.137 kb on + strandat 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.556 kb on - strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.684 kb on - strand, within AMB_RS19270at 4205.684 kb on - strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.688 kb on - strand, within AMB_RS19270at 4205.688 kb on - strand, within AMB_RS19270at 4205.705 kb on + strand, within AMB_RS19270at 4205.706 kb on - strand, within AMB_RS19270at 4205.706 kb on - strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
remove
4,203,383 + AMB_RS19260 0.61 +0.1
4,203,384 - AMB_RS19260 0.61 -0.9
4,203,605 - AMB_RS19260 0.71 -0.4
4,203,758 + AMB_RS19260 0.79 -2.3
4,203,758 + AMB_RS19260 0.79 -1.0
4,203,758 + AMB_RS19260 0.79 +0.1
4,203,758 + AMB_RS19260 0.79 +0.4
4,203,758 + AMB_RS19260 0.79 -0.1
4,203,758 + AMB_RS19260 0.79 -0.7
4,203,758 + AMB_RS19260 0.79 -0.8
4,203,758 + AMB_RS19260 0.79 +0.0
4,203,758 + AMB_RS19260 0.79 -0.2
4,203,759 - AMB_RS19260 0.79 -0.9
4,203,759 - AMB_RS19260 0.79 +0.1
4,203,759 - AMB_RS19260 0.79 -0.0
4,203,759 - AMB_RS19260 0.79 -0.8
4,203,759 - AMB_RS19260 0.79 +0.8
4,203,759 - AMB_RS19260 0.79 -0.3
4,203,759 - AMB_RS19260 0.79 +0.1
4,203,759 - AMB_RS19260 0.79 -1.4
4,203,759 - AMB_RS19260 0.79 +0.4
4,203,759 - AMB_RS19260 0.79 -0.2
4,203,759 - AMB_RS19260 0.79 +0.0
4,204,113 + -0.1
4,204,251 - -1.1
4,204,265 - -0.4
4,204,459 + AMB_RS19265 0.23 -0.4
4,204,460 - AMB_RS19265 0.23 +0.3
4,204,463 - AMB_RS19265 0.24 +0.1
4,204,463 - AMB_RS19265 0.24 +0.2
4,204,463 - AMB_RS19265 0.24 -1.5
4,204,492 + AMB_RS19265 0.28 -2.0
4,204,493 - AMB_RS19265 0.28 -0.1
4,204,714 + AMB_RS19265 0.60 +0.0
4,204,715 - AMB_RS19265 0.60 -0.7
4,204,715 - AMB_RS19265 0.60 -0.1
4,204,802 + AMB_RS19265 0.73 +0.1
4,204,802 + AMB_RS19265 0.73 -0.2
4,204,867 + AMB_RS19265 0.82 -0.8
4,204,868 - AMB_RS19265 0.82 -0.0
4,204,868 - AMB_RS19265 0.82 -1.3
4,204,954 + +0.3
4,205,127 - +0.7
4,205,127 - -0.1
4,205,137 + +0.0
4,205,555 + AMB_RS19270 0.50 -0.0
4,205,555 + AMB_RS19270 0.50 -1.1
4,205,555 + AMB_RS19270 0.50 -0.4
4,205,555 + AMB_RS19270 0.50 +1.7
4,205,556 - AMB_RS19270 0.50 -0.4
4,205,681 + AMB_RS19270 0.67 -0.9
4,205,681 + AMB_RS19270 0.67 +0.7
4,205,681 + AMB_RS19270 0.67 -0.7
4,205,681 + AMB_RS19270 0.67 -0.1
4,205,681 + AMB_RS19270 0.67 +0.8
4,205,681 + AMB_RS19270 0.67 +1.0
4,205,681 + AMB_RS19270 0.67 -0.4
4,205,682 - AMB_RS19270 0.67 +0.1
4,205,682 - AMB_RS19270 0.67 -0.9
4,205,682 - AMB_RS19270 0.67 +0.2
4,205,682 - AMB_RS19270 0.67 -0.1
4,205,683 + AMB_RS19270 0.67 -0.3
4,205,683 + AMB_RS19270 0.67 -1.4
4,205,683 + AMB_RS19270 0.67 +0.5
4,205,684 - AMB_RS19270 0.68 +0.1
4,205,684 - AMB_RS19270 0.68 -0.7
4,205,687 + AMB_RS19270 0.68 +0.2
4,205,687 + AMB_RS19270 0.68 -1.4
4,205,687 + AMB_RS19270 0.68 -0.5
4,205,687 + AMB_RS19270 0.68 -0.8
4,205,688 - AMB_RS19270 0.68 -0.5
4,205,688 - AMB_RS19270 0.68 -0.0
4,205,705 + AMB_RS19270 0.70 +0.4
4,205,706 - AMB_RS19270 0.71 -1.4
4,205,706 - AMB_RS19270 0.71 -0.7
4,205,783 + AMB_RS19270 0.81 +0.7
4,205,783 + AMB_RS19270 0.81 +0.0
4,205,783 + AMB_RS19270 0.81 -1.0

Or see this region's nucleotide sequence