Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19260

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19255 and AMB_RS19260 are separated by 48 nucleotidesAMB_RS19260 and AMB_RS19265 are separated by 101 nucleotidesAMB_RS19265 and AMB_RS19270 are separated by 200 nucleotides AMB_RS19255: AMB_RS19255 - excinuclease ABC subunit UvrB, at 4,199,974 to 4,202,082 _RS19255 AMB_RS19260: AMB_RS19260 - HAMP domain-containing protein, at 4,202,131 to 4,204,197 _RS19260 AMB_RS19265: AMB_RS19265 - RNA pseudouridine synthase, at 4,204,299 to 4,204,988 _RS19265 AMB_RS19270: AMB_RS19270 - spore coat polysaccharide biosynthesis protein F, at 4,205,189 to 4,205,920 _RS19270 Position (kb) 4202 4203 4204 4205Strain fitness (log2 ratio) -2 -1 0 1at 4201.286 kb on + strand, within AMB_RS19255at 4201.302 kb on - strand, within AMB_RS19255at 4201.490 kb on + strand, within AMB_RS19255at 4201.491 kb on - strand, within AMB_RS19255at 4201.491 kb on - strand, within AMB_RS19255at 4201.491 kb on - strand, within AMB_RS19255at 4201.571 kb on + strand, within AMB_RS19255at 4201.571 kb on + strand, within AMB_RS19255at 4201.571 kb on + strand, within AMB_RS19255at 4201.572 kb on - strand, within AMB_RS19255at 4201.595 kb on + strand, within AMB_RS19255at 4201.708 kb on - strand, within AMB_RS19255at 4201.709 kb on + strand, within AMB_RS19255at 4201.709 kb on + strand, within AMB_RS19255at 4201.709 kb on + strand, within AMB_RS19255at 4201.709 kb on + strand, within AMB_RS19255at 4201.713 kb on + strand, within AMB_RS19255at 4201.730 kb on + strand, within AMB_RS19255at 4201.730 kb on + strand, within AMB_RS19255at 4201.731 kb on - strand, within AMB_RS19255at 4201.731 kb on - strand, within AMB_RS19255at 4201.731 kb on - strand, within AMB_RS19255at 4201.745 kb on + strand, within AMB_RS19255at 4201.745 kb on + strand, within AMB_RS19255at 4201.746 kb on - strand, within AMB_RS19255at 4201.748 kb on + strand, within AMB_RS19255at 4201.754 kb on + strand, within AMB_RS19255at 4201.755 kb on - strand, within AMB_RS19255at 4201.757 kb on + strand, within AMB_RS19255at 4201.757 kb on + strand, within AMB_RS19255at 4201.769 kb on + strand, within AMB_RS19255at 4201.770 kb on - strand, within AMB_RS19255at 4201.770 kb on - strand, within AMB_RS19255at 4201.770 kb on - strand, within AMB_RS19255at 4201.811 kb on + strand, within AMB_RS19255at 4202.000 kb on + strandat 4202.091 kb on + strandat 4202.091 kb on + strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.092 kb on - strandat 4202.093 kb on + strandat 4202.093 kb on + strandat 4202.093 kb on + strandat 4202.093 kb on + strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.094 kb on - strandat 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.378 kb on + strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4202.379 kb on - strand, within AMB_RS19260at 4203.383 kb on + strand, within AMB_RS19260at 4203.384 kb on - strand, within AMB_RS19260at 4203.605 kb on - strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.758 kb on + strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4203.759 kb on - strand, within AMB_RS19260at 4204.113 kb on + strandat 4204.251 kb on - strandat 4204.265 kb on - strandat 4204.459 kb on + strand, within AMB_RS19265at 4204.460 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.463 kb on - strand, within AMB_RS19265at 4204.492 kb on + strand, within AMB_RS19265at 4204.493 kb on - strand, within AMB_RS19265at 4204.714 kb on + strand, within AMB_RS19265at 4204.715 kb on - strand, within AMB_RS19265at 4204.715 kb on - strand, within AMB_RS19265at 4204.802 kb on + strand, within AMB_RS19265at 4204.802 kb on + strand, within AMB_RS19265at 4204.867 kb on + strand, within AMB_RS19265at 4204.868 kb on - strand, within AMB_RS19265at 4204.868 kb on - strand, within AMB_RS19265at 4204.954 kb on + strandat 4205.127 kb on - strandat 4205.127 kb on - strandat 4205.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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4,201,286 + AMB_RS19255 0.62 +1.7
4,201,302 - AMB_RS19255 0.63 -1.1
4,201,490 + AMB_RS19255 0.72 -1.0
4,201,491 - AMB_RS19255 0.72 -1.2
4,201,491 - AMB_RS19255 0.72 +0.0
4,201,491 - AMB_RS19255 0.72 +0.2
4,201,571 + AMB_RS19255 0.76 -1.7
4,201,571 + AMB_RS19255 0.76 -1.5
4,201,571 + AMB_RS19255 0.76 -0.8
4,201,572 - AMB_RS19255 0.76 -0.9
4,201,595 + AMB_RS19255 0.77 +0.9
4,201,708 - AMB_RS19255 0.82 +0.5
4,201,709 + AMB_RS19255 0.82 -1.3
4,201,709 + AMB_RS19255 0.82 -0.9
4,201,709 + AMB_RS19255 0.82 -0.3
4,201,709 + AMB_RS19255 0.82 +0.9
4,201,713 + AMB_RS19255 0.82 -0.6
4,201,730 + AMB_RS19255 0.83 -0.9
4,201,730 + AMB_RS19255 0.83 -0.3
4,201,731 - AMB_RS19255 0.83 +1.3
4,201,731 - AMB_RS19255 0.83 -1.3
4,201,731 - AMB_RS19255 0.83 -1.1
4,201,745 + AMB_RS19255 0.84 +0.7
4,201,745 + AMB_RS19255 0.84 -0.8
4,201,746 - AMB_RS19255 0.84 -1.3
4,201,748 + AMB_RS19255 0.84 -0.6
4,201,754 + AMB_RS19255 0.84 +0.3
4,201,755 - AMB_RS19255 0.84 -2.0
4,201,757 + AMB_RS19255 0.85 -0.4
4,201,757 + AMB_RS19255 0.85 -0.3
4,201,769 + AMB_RS19255 0.85 +0.3
4,201,770 - AMB_RS19255 0.85 -1.7
4,201,770 - AMB_RS19255 0.85 -0.7
4,201,770 - AMB_RS19255 0.85 -1.3
4,201,811 + AMB_RS19255 0.87 -0.4
4,202,000 + -2.0
4,202,091 + -1.9
4,202,091 + +0.2
4,202,092 - -0.3
4,202,092 - +0.5
4,202,092 - -1.3
4,202,092 - -0.4
4,202,092 - +0.3
4,202,092 - -0.0
4,202,092 - -1.3
4,202,093 + -0.1
4,202,093 + +1.6
4,202,093 + -1.0
4,202,093 + -0.6
4,202,094 - +0.4
4,202,094 - -0.6
4,202,094 - -0.2
4,202,094 - -0.1
4,202,094 - -1.0
4,202,094 - +0.1
4,202,094 - +0.3
4,202,094 - +0.2
4,202,378 + AMB_RS19260 0.12 +0.2
4,202,378 + AMB_RS19260 0.12 -0.1
4,202,378 + AMB_RS19260 0.12 -0.0
4,202,378 + AMB_RS19260 0.12 +0.9
4,202,378 + AMB_RS19260 0.12 -0.1
4,202,378 + AMB_RS19260 0.12 -0.2
4,202,378 + AMB_RS19260 0.12 +0.1
4,202,379 - AMB_RS19260 0.12 +0.4
4,202,379 - AMB_RS19260 0.12 -1.7
4,202,379 - AMB_RS19260 0.12 -0.4
4,202,379 - AMB_RS19260 0.12 -0.2
4,202,379 - AMB_RS19260 0.12 +0.1
4,202,379 - AMB_RS19260 0.12 +0.0
4,202,379 - AMB_RS19260 0.12 -0.4
4,203,383 + AMB_RS19260 0.61 +0.1
4,203,384 - AMB_RS19260 0.61 -0.9
4,203,605 - AMB_RS19260 0.71 -0.4
4,203,758 + AMB_RS19260 0.79 -2.3
4,203,758 + AMB_RS19260 0.79 -1.0
4,203,758 + AMB_RS19260 0.79 +0.1
4,203,758 + AMB_RS19260 0.79 +0.4
4,203,758 + AMB_RS19260 0.79 -0.1
4,203,758 + AMB_RS19260 0.79 -0.7
4,203,758 + AMB_RS19260 0.79 -0.8
4,203,758 + AMB_RS19260 0.79 +0.0
4,203,758 + AMB_RS19260 0.79 -0.2
4,203,759 - AMB_RS19260 0.79 -0.9
4,203,759 - AMB_RS19260 0.79 +0.1
4,203,759 - AMB_RS19260 0.79 -0.0
4,203,759 - AMB_RS19260 0.79 -0.8
4,203,759 - AMB_RS19260 0.79 +0.8
4,203,759 - AMB_RS19260 0.79 -0.3
4,203,759 - AMB_RS19260 0.79 +0.1
4,203,759 - AMB_RS19260 0.79 -1.4
4,203,759 - AMB_RS19260 0.79 +0.4
4,203,759 - AMB_RS19260 0.79 -0.2
4,203,759 - AMB_RS19260 0.79 +0.0
4,204,113 + -0.1
4,204,251 - -1.1
4,204,265 - -0.4
4,204,459 + AMB_RS19265 0.23 -0.4
4,204,460 - AMB_RS19265 0.23 +0.3
4,204,463 - AMB_RS19265 0.24 +0.1
4,204,463 - AMB_RS19265 0.24 +0.2
4,204,463 - AMB_RS19265 0.24 -1.5
4,204,492 + AMB_RS19265 0.28 -2.0
4,204,493 - AMB_RS19265 0.28 -0.1
4,204,714 + AMB_RS19265 0.60 +0.0
4,204,715 - AMB_RS19265 0.60 -0.7
4,204,715 - AMB_RS19265 0.60 -0.1
4,204,802 + AMB_RS19265 0.73 +0.1
4,204,802 + AMB_RS19265 0.73 -0.2
4,204,867 + AMB_RS19265 0.82 -0.8
4,204,868 - AMB_RS19265 0.82 -0.0
4,204,868 - AMB_RS19265 0.82 -1.3
4,204,954 + +0.3
4,205,127 - +0.7
4,205,127 - -0.1
4,205,137 + +0.0

Or see this region's nucleotide sequence