Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS16235 and AMB_RS16240 are separated by 5 nucleotides AMB_RS16240 and AMB_RS16245 overlap by 17 nucleotides AMB_RS16245 and AMB_RS16250 overlap by 4 nucleotides AMB_RS16250 and AMB_RS16255 overlap by 4 nucleotides AMB_RS16255 and AMB_RS16260 overlap by 4 nucleotides
AMB_RS16235: AMB_RS16235 - protein TolQ, at 3,481,349 to 3,482,074
_RS16235
AMB_RS16240: AMB_RS16240 - tol-pal system-associated acyl-CoA thioesterase, at 3,482,080 to 3,482,661
_RS16240
AMB_RS16245: AMB_RS16245 - Holliday junction branch migration DNA helicase RuvB, at 3,482,645 to 3,483,688
_RS16245
AMB_RS16250: AMB_RS16250 - hypothetical protein, at 3,483,685 to 3,483,972
_RS16250
AMB_RS16255: AMB_RS16255 - Holliday junction branch migration protein RuvA, at 3,483,969 to 3,484,607
_RS16255
AMB_RS16260: AMB_RS16260 - crossover junction endodeoxyribonuclease RuvC, at 3,484,604 to 3,485,104
_RS16260
Position (kb) 3482
3483
3484 Strain fitness (log2 ratio) -1
0
1 at 3482.082 kb on - strand at 3482.161 kb on - strand, within AMB_RS16240 at 3482.161 kb on - strand, within AMB_RS16240 at 3482.163 kb on - strand, within AMB_RS16240 at 3482.163 kb on - strand, within AMB_RS16240 at 3482.163 kb on - strand, within AMB_RS16240 at 3482.163 kb on - strand, within AMB_RS16240 at 3482.234 kb on - strand, within AMB_RS16240 at 3482.234 kb on - strand, within AMB_RS16240 at 3482.234 kb on - strand, within AMB_RS16240 at 3482.234 kb on - strand, within AMB_RS16240 at 3482.234 kb on - strand, within AMB_RS16240 at 3482.236 kb on - strand, within AMB_RS16240 at 3482.427 kb on - strand, within AMB_RS16240 at 3482.439 kb on - strand, within AMB_RS16240 at 3482.439 kb on - strand, within AMB_RS16240 at 3482.439 kb on - strand, within AMB_RS16240 at 3482.468 kb on + strand, within AMB_RS16240 at 3482.469 kb on - strand, within AMB_RS16240 at 3482.491 kb on - strand, within AMB_RS16240 at 3482.491 kb on - strand, within AMB_RS16240 at 3482.491 kb on - strand, within AMB_RS16240 at 3482.720 kb on - strand at 3482.720 kb on - strand at 3483.747 kb on - strand, within AMB_RS16250 at 3483.747 kb on - strand, within AMB_RS16250 at 3483.872 kb on - strand, within AMB_RS16250
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 3,482,082 - +0.3 3,482,161 - AMB_RS16240 0.14 +0.4 3,482,161 - AMB_RS16240 0.14 +0.1 3,482,163 - AMB_RS16240 0.14 +0.3 3,482,163 - AMB_RS16240 0.14 -0.2 3,482,163 - AMB_RS16240 0.14 +0.9 3,482,163 - AMB_RS16240 0.14 -0.1 3,482,234 - AMB_RS16240 0.26 -0.5 3,482,234 - AMB_RS16240 0.26 -1.2 3,482,234 - AMB_RS16240 0.26 -1.1 3,482,234 - AMB_RS16240 0.26 +0.4 3,482,234 - AMB_RS16240 0.26 +0.3 3,482,236 - AMB_RS16240 0.27 -0.1 3,482,427 - AMB_RS16240 0.60 -0.4 3,482,439 - AMB_RS16240 0.62 -0.7 3,482,439 - AMB_RS16240 0.62 -0.8 3,482,439 - AMB_RS16240 0.62 +0.0 3,482,468 + AMB_RS16240 0.67 +0.3 3,482,469 - AMB_RS16240 0.67 +0.1 3,482,491 - AMB_RS16240 0.71 -0.5 3,482,491 - AMB_RS16240 0.71 -0.6 3,482,491 - AMB_RS16240 0.71 -0.5 3,482,720 - -0.4 3,482,720 - -0.2 3,483,747 - AMB_RS16250 0.22 -0.4 3,483,747 - AMB_RS16250 0.22 -0.0 3,483,872 - AMB_RS16250 0.65 -0.4
Or see this region's nucleotide sequence