Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14100

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14095 and AMB_RS14100 are separated by 176 nucleotidesAMB_RS14100 and AMB_RS14105 are separated by 81 nucleotides AMB_RS14095: AMB_RS14095 - DUF4131 domain-containing protein, at 2,993,023 to 2,995,167 _RS14095 AMB_RS14100: AMB_RS14100 - glutamate--tRNA ligase, at 2,995,344 to 2,996,777 _RS14100 AMB_RS14105: AMB_RS14105 - citrate (Si)-synthase, at 2,996,859 to 2,998,175 _RS14105 Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -3 -2 -1 0 1at 2994.420 kb on - strand, within AMB_RS14095at 2994.721 kb on - strand, within AMB_RS14095at 2995.088 kb on + strandat 2995.088 kb on + strandat 2995.089 kb on - strandat 2995.287 kb on + strandat 2995.287 kb on + strandat 2995.287 kb on + strandat 2995.287 kb on + strandat 2996.820 kb on + strandat 2996.826 kb on + strandat 2996.826 kb on + strandat 2996.838 kb on + strandat 2996.838 kb on + strandat 2996.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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2,994,420 - AMB_RS14095 0.65 +0.8
2,994,721 - AMB_RS14095 0.79 +0.3
2,995,088 + -2.8
2,995,088 + -0.4
2,995,089 - -0.0
2,995,287 + -0.7
2,995,287 + -0.0
2,995,287 + -0.7
2,995,287 + -0.8
2,996,820 + -0.2
2,996,826 + +0.7
2,996,826 + -0.1
2,996,838 + -0.7
2,996,838 + -0.4
2,996,838 + -1.4

Or see this region's nucleotide sequence