Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13615

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS13605 and AMB_RS13610 are separated by 152 nucleotidesAMB_RS13610 and AMB_RS13615 overlap by 1 nucleotidesAMB_RS13615 and AMB_RS13620 are separated by 4 nucleotides AMB_RS13605: AMB_RS13605 - ABC-type phosphate transport system, at 2,898,144 to 2,898,956 _RS13605 AMB_RS13610: AMB_RS13610 - type II 3-dehydroquinate dehydratase, at 2,899,109 to 2,899,576 _RS13610 AMB_RS13615: AMB_RS13615 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 2,899,576 to 2,900,025 _RS13615 AMB_RS13620: AMB_RS13620 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,900,030 to 2,901,373 _RS13620 Position (kb) 2899 2900 2901Strain fitness (log2 ratio) -2 -1 0 1at 2898.946 kb on + strandat 2898.947 kb on - strandat 2899.010 kb on - strandat 2899.010 kb on - strandat 2899.012 kb on + strandat 2899.070 kb on + strandat 2899.070 kb on + strandat 2899.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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2,898,946 + -0.1
2,898,947 - -0.1
2,899,010 - -0.2
2,899,010 - -0.3
2,899,012 + -0.6
2,899,070 + +0.8
2,899,070 + -2.7
2,899,070 + +0.6

Or see this region's nucleotide sequence