Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS11715 and AMB_RS11720 are separated by 13 nucleotides AMB_RS11720 and AMB_RS11725 are separated by 28 nucleotides AMB_RS11725 and AMB_RS11730 are separated by 13 nucleotides
AMB_RS11715: AMB_RS11715 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, at 2,521,604 to 2,522,887
_RS11715
AMB_RS11720: AMB_RS11720 - hypothetical protein, at 2,522,901 to 2,523,479
_RS11720
AMB_RS11725: AMB_RS11725 - hypothetical protein, at 2,523,508 to 2,523,975
_RS11725
AMB_RS11730: AMB_RS11730 - dihydrolipoyl dehydrogenase, at 2,523,989 to 2,525,377
_RS11730
Position (kb)
2523
2524 Strain fitness (log2 ratio)
-2
-1
0
1 at 2523.414 kb on + strand, within AMB_RS11720 at 2523.787 kb on + strand, within AMB_RS11725 at 2523.787 kb on + strand, within AMB_RS11725 at 2523.787 kb on + strand, within AMB_RS11725 at 2523.787 kb on + strand, within AMB_RS11725 at 2523.787 kb on + strand, within AMB_RS11725 at 2523.856 kb on + strand, within AMB_RS11725 at 2523.919 kb on + strand, within AMB_RS11725
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 2,523,414 + AMB_RS11720 0.89 +0.2 2,523,787 + AMB_RS11725 0.60 -0.8 2,523,787 + AMB_RS11725 0.60 +0.3 2,523,787 + AMB_RS11725 0.60 -0.2 2,523,787 + AMB_RS11725 0.60 +0.3 2,523,787 + AMB_RS11725 0.60 -0.7 2,523,856 + AMB_RS11725 0.74 -2.1 2,523,919 + AMB_RS11725 0.88 +0.7
Or see this region's nucleotide sequence