Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08815

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23325 and AMB_RS08810 are separated by 3 nucleotidesAMB_RS08810 and AMB_RS08815 are separated by 11 nucleotidesAMB_RS08815 and AMB_RS08820 overlap by 91 nucleotidesAMB_RS08820 and AMB_RS08825 are separated by 2 nucleotidesAMB_RS08825 and AMB_RS08830 are separated by 4 nucleotidesAMB_RS08830 and AMB_RS08835 are separated by 4 nucleotides AMB_RS23325: AMB_RS23325 - hypothetical protein, at 1,885,351 to 1,886,415 _RS23325 AMB_RS08810: AMB_RS08810 - phage head protein, at 1,886,419 to 1,887,348 _RS08810 AMB_RS08815: AMB_RS08815 - phage tail protein, at 1,887,360 to 1,890,977 _RS08815 AMB_RS08820: AMB_RS08820 - hypothetical protein, at 1,890,887 to 1,891,270 _RS08820 AMB_RS08825: AMB_RS08825 - hypothetical protein, at 1,891,273 to 1,891,569 _RS08825 AMB_RS08830: AMB_RS08830 - hypothetical protein, at 1,891,574 to 1,891,963 _RS08830 AMB_RS08835: AMB_RS08835 - hypothetical protein, at 1,891,968 to 1,892,171 _RS08835 Position (kb) 1887 1888 1889 1890 1891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1886.414 kb on - strandat 1886.414 kb on - strandat 1886.414 kb on - strandat 1886.560 kb on + strand, within AMB_RS08810at 1886.560 kb on + strand, within AMB_RS08810at 1886.708 kb on - strand, within AMB_RS08810at 1886.776 kb on + strand, within AMB_RS08810at 1886.813 kb on - strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.006 kb on + strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.007 kb on - strand, within AMB_RS08810at 1887.028 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.034 kb on + strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.035 kb on - strand, within AMB_RS08810at 1887.271 kb on - strandat 1887.341 kb on - strandat 1887.395 kb on + strandat 1887.643 kb on + strandat 1887.644 kb on - strandat 1887.999 kb on + strand, within AMB_RS08815at 1888.275 kb on + strand, within AMB_RS08815at 1888.275 kb on + strand, within AMB_RS08815at 1888.275 kb on + strand, within AMB_RS08815at 1888.275 kb on + strand, within AMB_RS08815at 1888.275 kb on + strand, within AMB_RS08815at 1888.276 kb on - strand, within AMB_RS08815at 1888.276 kb on - strand, within AMB_RS08815at 1888.396 kb on - strand, within AMB_RS08815at 1888.396 kb on - strand, within AMB_RS08815at 1888.396 kb on - strand, within AMB_RS08815at 1888.396 kb on - strand, within AMB_RS08815at 1888.397 kb on + strand, within AMB_RS08815at 1888.397 kb on + strand, within AMB_RS08815at 1888.398 kb on - strand, within AMB_RS08815at 1888.398 kb on - strand, within AMB_RS08815at 1888.398 kb on - strand, within AMB_RS08815at 1888.398 kb on - strand, within AMB_RS08815at 1888.853 kb on + strand, within AMB_RS08815at 1888.853 kb on + strand, within AMB_RS08815at 1888.854 kb on - strand, within AMB_RS08815at 1888.854 kb on - strand, within AMB_RS08815at 1888.968 kb on + strand, within AMB_RS08815at 1888.968 kb on + strand, within AMB_RS08815at 1888.968 kb on + strand, within AMB_RS08815at 1888.969 kb on - strand, within AMB_RS08815at 1889.179 kb on + strand, within AMB_RS08815at 1889.179 kb on + strand, within AMB_RS08815at 1889.180 kb on - strand, within AMB_RS08815at 1889.301 kb on + strand, within AMB_RS08815at 1889.302 kb on - strand, within AMB_RS08815at 1889.466 kb on - strand, within AMB_RS08815at 1889.668 kb on - strand, within AMB_RS08815at 1889.668 kb on - strand, within AMB_RS08815at 1889.724 kb on + strand, within AMB_RS08815at 1889.724 kb on + strand, within AMB_RS08815at 1889.725 kb on - strand, within AMB_RS08815at 1889.853 kb on + strand, within AMB_RS08815at 1889.854 kb on - strand, within AMB_RS08815at 1890.044 kb on + strand, within AMB_RS08815at 1890.044 kb on + strand, within AMB_RS08815at 1890.063 kb on + strand, within AMB_RS08815at 1890.063 kb on + strand, within AMB_RS08815at 1890.063 kb on + strand, within AMB_RS08815at 1890.063 kb on + strand, within AMB_RS08815at 1890.064 kb on - strand, within AMB_RS08815at 1890.105 kb on + strand, within AMB_RS08815at 1890.105 kb on + strand, within AMB_RS08815at 1890.126 kb on + strand, within AMB_RS08815at 1890.126 kb on + strand, within AMB_RS08815at 1890.284 kb on - strand, within AMB_RS08815at 1890.284 kb on - strand, within AMB_RS08815at 1890.284 kb on - strand, within AMB_RS08815at 1890.345 kb on + strand, within AMB_RS08815at 1890.345 kb on + strand, within AMB_RS08815at 1890.346 kb on - strand, within AMB_RS08815at 1890.410 kb on + strand, within AMB_RS08815at 1890.603 kb on + strand, within AMB_RS08815at 1890.604 kb on - strand, within AMB_RS08815at 1890.765 kb on + strandat 1890.765 kb on + strandat 1890.851 kb on + strandat 1890.851 kb on + strandat 1890.851 kb on + strandat 1890.851 kb on + strandat 1890.863 kb on + strandat 1890.863 kb on + strandat 1890.864 kb on - strandat 1890.864 kb on - strandat 1890.950 kb on + strandat 1890.951 kb on - strandat 1890.951 kb on - strandat 1891.192 kb on - strand, within AMB_RS08820at 1891.333 kb on + strand, within AMB_RS08825at 1891.334 kb on - strand, within AMB_RS08825at 1891.334 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.388 kb on - strand, within AMB_RS08825at 1891.520 kb on - strand, within AMB_RS08825at 1891.520 kb on - strand, within AMB_RS08825at 1891.520 kb on - strand, within AMB_RS08825at 1891.913 kb on - strand, within AMB_RS08830

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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1,886,414 - -0.3
1,886,414 - -0.1
1,886,414 - -0.5
1,886,560 + AMB_RS08810 0.15 +0.7
1,886,560 + AMB_RS08810 0.15 +0.6
1,886,708 - AMB_RS08810 0.31 +0.4
1,886,776 + AMB_RS08810 0.38 +0.3
1,886,813 - AMB_RS08810 0.42 -0.6
1,887,006 + AMB_RS08810 0.63 -0.0
1,887,006 + AMB_RS08810 0.63 -0.2
1,887,006 + AMB_RS08810 0.63 -0.2
1,887,007 - AMB_RS08810 0.63 -3.0
1,887,007 - AMB_RS08810 0.63 +0.9
1,887,007 - AMB_RS08810 0.63 -0.2
1,887,007 - AMB_RS08810 0.63 +0.0
1,887,028 + AMB_RS08810 0.65 +0.9
1,887,034 + AMB_RS08810 0.66 -0.2
1,887,034 + AMB_RS08810 0.66 -0.3
1,887,034 + AMB_RS08810 0.66 -1.2
1,887,034 + AMB_RS08810 0.66 -0.1
1,887,034 + AMB_RS08810 0.66 -0.1
1,887,035 - AMB_RS08810 0.66 -0.3
1,887,035 - AMB_RS08810 0.66 -0.1
1,887,035 - AMB_RS08810 0.66 -0.1
1,887,271 - -0.7
1,887,341 - -1.0
1,887,395 + -1.7
1,887,643 + +0.2
1,887,644 - -0.2
1,887,999 + AMB_RS08815 0.18 +0.1
1,888,275 + AMB_RS08815 0.25 -0.7
1,888,275 + AMB_RS08815 0.25 -2.7
1,888,275 + AMB_RS08815 0.25 -0.7
1,888,275 + AMB_RS08815 0.25 -0.2
1,888,275 + AMB_RS08815 0.25 -0.7
1,888,276 - AMB_RS08815 0.25 -0.9
1,888,276 - AMB_RS08815 0.25 -0.1
1,888,396 - AMB_RS08815 0.29 +0.3
1,888,396 - AMB_RS08815 0.29 -0.6
1,888,396 - AMB_RS08815 0.29 +0.2
1,888,396 - AMB_RS08815 0.29 -1.9
1,888,397 + AMB_RS08815 0.29 -1.1
1,888,397 + AMB_RS08815 0.29 -1.3
1,888,398 - AMB_RS08815 0.29 +0.0
1,888,398 - AMB_RS08815 0.29 -0.3
1,888,398 - AMB_RS08815 0.29 -0.5
1,888,398 - AMB_RS08815 0.29 -1.2
1,888,853 + AMB_RS08815 0.41 -0.9
1,888,853 + AMB_RS08815 0.41 -0.2
1,888,854 - AMB_RS08815 0.41 -1.5
1,888,854 - AMB_RS08815 0.41 +0.5
1,888,968 + AMB_RS08815 0.44 -0.7
1,888,968 + AMB_RS08815 0.44 +0.2
1,888,968 + AMB_RS08815 0.44 +0.2
1,888,969 - AMB_RS08815 0.44 +0.1
1,889,179 + AMB_RS08815 0.50 +0.1
1,889,179 + AMB_RS08815 0.50 +0.1
1,889,180 - AMB_RS08815 0.50 -0.2
1,889,301 + AMB_RS08815 0.54 -0.1
1,889,302 - AMB_RS08815 0.54 -2.7
1,889,466 - AMB_RS08815 0.58 +0.0
1,889,668 - AMB_RS08815 0.64 +0.5
1,889,668 - AMB_RS08815 0.64 +1.2
1,889,724 + AMB_RS08815 0.65 -0.1
1,889,724 + AMB_RS08815 0.65 -0.2
1,889,725 - AMB_RS08815 0.65 +0.3
1,889,853 + AMB_RS08815 0.69 -1.5
1,889,854 - AMB_RS08815 0.69 -0.5
1,890,044 + AMB_RS08815 0.74 +1.0
1,890,044 + AMB_RS08815 0.74 -2.0
1,890,063 + AMB_RS08815 0.75 -1.4
1,890,063 + AMB_RS08815 0.75 -1.3
1,890,063 + AMB_RS08815 0.75 +0.4
1,890,063 + AMB_RS08815 0.75 -0.1
1,890,064 - AMB_RS08815 0.75 -0.6
1,890,105 + AMB_RS08815 0.76 -1.4
1,890,105 + AMB_RS08815 0.76 +0.3
1,890,126 + AMB_RS08815 0.76 -0.7
1,890,126 + AMB_RS08815 0.76 -0.4
1,890,284 - AMB_RS08815 0.81 -1.5
1,890,284 - AMB_RS08815 0.81 +2.4
1,890,284 - AMB_RS08815 0.81 -0.2
1,890,345 + AMB_RS08815 0.83 +0.1
1,890,345 + AMB_RS08815 0.83 -0.1
1,890,346 - AMB_RS08815 0.83 -0.1
1,890,410 + AMB_RS08815 0.84 -0.5
1,890,603 + AMB_RS08815 0.90 -1.2
1,890,604 - AMB_RS08815 0.90 +0.1
1,890,765 + -0.3
1,890,765 + -0.1
1,890,851 + +0.6
1,890,851 + -0.0
1,890,851 + +0.0
1,890,851 + -0.5
1,890,863 + -0.7
1,890,863 + +0.9
1,890,864 - -0.9
1,890,864 - +0.8
1,890,950 + +1.9
1,890,951 - -0.5
1,890,951 - +0.3
1,891,192 - AMB_RS08820 0.79 -1.0
1,891,333 + AMB_RS08825 0.20 +0.2
1,891,334 - AMB_RS08825 0.21 -1.7
1,891,334 - AMB_RS08825 0.21 +0.3
1,891,388 - AMB_RS08825 0.39 +0.7
1,891,388 - AMB_RS08825 0.39 +0.3
1,891,388 - AMB_RS08825 0.39 +2.0
1,891,388 - AMB_RS08825 0.39 -0.5
1,891,388 - AMB_RS08825 0.39 +0.1
1,891,388 - AMB_RS08825 0.39 -3.2
1,891,388 - AMB_RS08825 0.39 +0.6
1,891,520 - AMB_RS08825 0.83 -0.1
1,891,520 - AMB_RS08825 0.83 -1.3
1,891,520 - AMB_RS08825 0.83 -0.2
1,891,913 - AMB_RS08830 0.87 -0.5

Or see this region's nucleotide sequence