Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08485

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08475 and AMB_RS08480 overlap by 4 nucleotidesAMB_RS08480 and AMB_RS08485 are separated by 2 nucleotidesAMB_RS08485 and AMB_RS08490 are separated by 5 nucleotides AMB_RS08475: AMB_RS08475 - hypothetical protein, at 1,814,179 to 1,814,751 _RS08475 AMB_RS08480: AMB_RS08480 - ferredoxin oxidoreductase, at 1,814,748 to 1,815,017 _RS08480 AMB_RS08485: AMB_RS08485 - hypothetical protein, at 1,815,020 to 1,816,237 _RS08485 AMB_RS08490: AMB_RS08490 - FAD-dependent oxidoreductase, at 1,816,243 to 1,817,478 _RS08490 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1814.068 kb on + strandat 1814.151 kb on + strandat 1814.151 kb on + strandat 1814.151 kb on + strandat 1814.152 kb on - strandat 1814.367 kb on + strand, within AMB_RS08475at 1814.367 kb on + strand, within AMB_RS08475at 1814.371 kb on + strand, within AMB_RS08475at 1814.371 kb on + strand, within AMB_RS08475at 1814.371 kb on + strand, within AMB_RS08475at 1814.371 kb on + strand, within AMB_RS08475at 1814.372 kb on - strand, within AMB_RS08475at 1814.372 kb on - strand, within AMB_RS08475at 1814.372 kb on - strand, within AMB_RS08475at 1814.372 kb on - strand, within AMB_RS08475at 1814.429 kb on - strand, within AMB_RS08475at 1814.682 kb on + strand, within AMB_RS08475at 1814.796 kb on + strand, within AMB_RS08480at 1814.797 kb on - strand, within AMB_RS08480at 1814.884 kb on - strand, within AMB_RS08480at 1814.884 kb on - strand, within AMB_RS08480at 1814.934 kb on + strand, within AMB_RS08480at 1814.934 kb on + strand, within AMB_RS08480at 1814.935 kb on - strand, within AMB_RS08480at 1814.935 kb on - strand, within AMB_RS08480at 1814.935 kb on - strand, within AMB_RS08480at 1814.940 kb on + strand, within AMB_RS08480at 1814.941 kb on - strand, within AMB_RS08480at 1814.941 kb on - strand, within AMB_RS08480at 1814.941 kb on - strand, within AMB_RS08480at 1815.117 kb on - strandat 1815.150 kb on - strand, within AMB_RS08485at 1815.150 kb on - strand, within AMB_RS08485at 1815.150 kb on - strand, within AMB_RS08485at 1815.263 kb on + strand, within AMB_RS08485at 1815.264 kb on - strand, within AMB_RS08485at 1815.309 kb on - strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.486 kb on - strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.546 kb on - strand, within AMB_RS08485at 1815.546 kb on - strand, within AMB_RS08485at 1815.554 kb on + strand, within AMB_RS08485at 1815.554 kb on + strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.827 kb on + strand, within AMB_RS08485at 1815.828 kb on - strand, within AMB_RS08485at 1816.056 kb on - strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.262 kb on - strandat 1816.262 kb on - strandat 1816.370 kb on - strand, within AMB_RS08490at 1816.390 kb on + strand, within AMB_RS08490at 1816.390 kb on + strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.793 kb on - strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.210 kb on - strand, within AMB_RS08490

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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1,814,068 + +0.0
1,814,151 + +1.3
1,814,151 + -0.7
1,814,151 + -0.5
1,814,152 - +0.3
1,814,367 + AMB_RS08475 0.33 -1.3
1,814,367 + AMB_RS08475 0.33 -0.7
1,814,371 + AMB_RS08475 0.34 -0.6
1,814,371 + AMB_RS08475 0.34 -1.8
1,814,371 + AMB_RS08475 0.34 +0.8
1,814,371 + AMB_RS08475 0.34 -0.7
1,814,372 - AMB_RS08475 0.34 -0.2
1,814,372 - AMB_RS08475 0.34 -4.0
1,814,372 - AMB_RS08475 0.34 +0.5
1,814,372 - AMB_RS08475 0.34 -0.8
1,814,429 - AMB_RS08475 0.44 +0.1
1,814,682 + AMB_RS08475 0.88 -2.0
1,814,796 + AMB_RS08480 0.18 +0.1
1,814,797 - AMB_RS08480 0.18 -0.2
1,814,884 - AMB_RS08480 0.50 +0.1
1,814,884 - AMB_RS08480 0.50 +0.1
1,814,934 + AMB_RS08480 0.69 -0.4
1,814,934 + AMB_RS08480 0.69 +0.1
1,814,935 - AMB_RS08480 0.69 -1.2
1,814,935 - AMB_RS08480 0.69 -0.5
1,814,935 - AMB_RS08480 0.69 -0.3
1,814,940 + AMB_RS08480 0.71 +1.0
1,814,941 - AMB_RS08480 0.71 +1.9
1,814,941 - AMB_RS08480 0.71 +0.8
1,814,941 - AMB_RS08480 0.71 +0.6
1,815,117 - -0.2
1,815,150 - AMB_RS08485 0.11 -0.6
1,815,150 - AMB_RS08485 0.11 -0.4
1,815,150 - AMB_RS08485 0.11 -0.6
1,815,263 + AMB_RS08485 0.20 -0.6
1,815,264 - AMB_RS08485 0.20 -0.5
1,815,309 - AMB_RS08485 0.24 -0.3
1,815,440 + AMB_RS08485 0.34 -0.9
1,815,440 + AMB_RS08485 0.34 -0.2
1,815,440 + AMB_RS08485 0.34 -1.2
1,815,440 + AMB_RS08485 0.34 -1.5
1,815,440 + AMB_RS08485 0.34 -0.7
1,815,440 + AMB_RS08485 0.34 -0.5
1,815,440 + AMB_RS08485 0.34 -2.7
1,815,440 + AMB_RS08485 0.34 -0.0
1,815,440 + AMB_RS08485 0.34 -0.1
1,815,441 - AMB_RS08485 0.35 +1.0
1,815,441 - AMB_RS08485 0.35 +0.2
1,815,441 - AMB_RS08485 0.35 -0.5
1,815,441 - AMB_RS08485 0.35 +0.1
1,815,441 - AMB_RS08485 0.35 -0.6
1,815,441 - AMB_RS08485 0.35 +0.0
1,815,441 - AMB_RS08485 0.35 +0.3
1,815,486 - AMB_RS08485 0.38 -1.7
1,815,545 + AMB_RS08485 0.43 -0.1
1,815,545 + AMB_RS08485 0.43 +0.1
1,815,545 + AMB_RS08485 0.43 -0.1
1,815,546 - AMB_RS08485 0.43 -0.7
1,815,546 - AMB_RS08485 0.43 +0.7
1,815,554 + AMB_RS08485 0.44 +0.9
1,815,554 + AMB_RS08485 0.44 +0.2
1,815,555 - AMB_RS08485 0.44 -0.8
1,815,555 - AMB_RS08485 0.44 +0.7
1,815,555 - AMB_RS08485 0.44 -0.3
1,815,555 - AMB_RS08485 0.44 -0.0
1,815,555 - AMB_RS08485 0.44 -1.0
1,815,827 + AMB_RS08485 0.66 -1.0
1,815,828 - AMB_RS08485 0.66 -0.0
1,816,056 - AMB_RS08485 0.85 -0.8
1,816,079 + AMB_RS08485 0.87 -0.3
1,816,079 + AMB_RS08485 0.87 -0.6
1,816,079 + AMB_RS08485 0.87 +1.6
1,816,080 - AMB_RS08485 0.87 +0.0
1,816,080 - AMB_RS08485 0.87 +0.1
1,816,080 - AMB_RS08485 0.87 -0.3
1,816,080 - AMB_RS08485 0.87 -0.1
1,816,080 - AMB_RS08485 0.87 +1.6
1,816,261 + -0.1
1,816,261 + +0.0
1,816,261 + -0.8
1,816,261 + -0.2
1,816,261 + -0.1
1,816,261 + -0.2
1,816,261 + +2.9
1,816,262 - -1.3
1,816,262 - -1.4
1,816,370 - AMB_RS08490 0.10 -1.9
1,816,390 + AMB_RS08490 0.12 -0.0
1,816,390 + AMB_RS08490 0.12 -0.2
1,816,391 - AMB_RS08490 0.12 -0.5
1,816,391 - AMB_RS08490 0.12 -0.3
1,816,391 - AMB_RS08490 0.12 -0.9
1,816,468 + AMB_RS08490 0.18 +1.3
1,816,468 + AMB_RS08490 0.18 -1.6
1,816,468 + AMB_RS08490 0.18 -0.2
1,816,469 - AMB_RS08490 0.18 -1.4
1,816,469 - AMB_RS08490 0.18 +0.8
1,816,469 - AMB_RS08490 0.18 -0.4
1,816,618 + AMB_RS08490 0.30 -0.8
1,816,618 + AMB_RS08490 0.30 +1.6
1,816,618 + AMB_RS08490 0.30 -0.4
1,816,618 + AMB_RS08490 0.30 -1.5
1,816,619 - AMB_RS08490 0.30 -0.4
1,816,619 - AMB_RS08490 0.30 -0.5
1,816,619 - AMB_RS08490 0.30 -1.6
1,816,619 - AMB_RS08490 0.30 -0.8
1,816,619 - AMB_RS08490 0.30 -0.1
1,816,619 - AMB_RS08490 0.30 -0.1
1,816,619 - AMB_RS08490 0.30 -0.2
1,816,793 - AMB_RS08490 0.44 +1.0
1,817,209 + AMB_RS08490 0.78 -1.4
1,817,209 + AMB_RS08490 0.78 +0.0
1,817,209 + AMB_RS08490 0.78 +1.5
1,817,210 - AMB_RS08490 0.78 -0.5

Or see this region's nucleotide sequence