Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07905

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07890 and AMB_RS07895 are separated by 26 nucleotidesAMB_RS07895 and AMB_RS07900 are separated by 17 nucleotidesAMB_RS07900 and AMB_RS07905 overlap by 29 nucleotidesAMB_RS07905 and AMB_RS07910 overlap by 1 nucleotides AMB_RS07890: AMB_RS07890 - ferredoxin III, nif-specific, at 1,694,594 to 1,694,893 _RS07890 AMB_RS07895: AMB_RS07895 - DUF269 domain-containing protein, at 1,694,920 to 1,695,366 _RS07895 AMB_RS07900: AMB_RS07900 - nitrogen fixation protein NifX, at 1,695,384 to 1,695,884 _RS07900 AMB_RS07905: AMB_RS07905 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 1,695,856 to 1,697,214 _RS07905 AMB_RS07910: AMB_RS07910 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 1,697,214 to 1,698,596 _RS07910 Position (kb) 1695 1696 1697 1698Strain fitness (log2 ratio) -1 0 1at 1694.916 kb on + strandat 1694.942 kb on + strandat 1694.942 kb on + strandat 1694.942 kb on + strandat 1694.943 kb on - strandat 1695.041 kb on + strand, within AMB_RS07895at 1695.041 kb on + strand, within AMB_RS07895at 1695.042 kb on - strand, within AMB_RS07895at 1695.042 kb on - strand, within AMB_RS07895at 1695.042 kb on - strand, within AMB_RS07895at 1695.170 kb on + strand, within AMB_RS07895at 1695.244 kb on - strand, within AMB_RS07895at 1695.249 kb on + strand, within AMB_RS07895at 1695.250 kb on - strand, within AMB_RS07895at 1695.251 kb on + strand, within AMB_RS07895at 1695.252 kb on - strand, within AMB_RS07895at 1695.252 kb on - strand, within AMB_RS07895at 1695.252 kb on - strand, within AMB_RS07895at 1695.252 kb on - strand, within AMB_RS07895at 1695.727 kb on + strand, within AMB_RS07900at 1695.727 kb on + strand, within AMB_RS07900at 1695.728 kb on - strand, within AMB_RS07900at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.657 kb on + strand, within AMB_RS07905at 1696.658 kb on - strand, within AMB_RS07905at 1697.311 kb on + strandat 1697.320 kb on + strandat 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.608 kb on + strand, within AMB_RS07910at 1697.608 kb on + strand, within AMB_RS07910at 1697.644 kb on + strand, within AMB_RS07910at 1697.645 kb on - strand, within AMB_RS07910at 1697.645 kb on - strand, within AMB_RS07910at 1697.786 kb on - strand, within AMB_RS07910at 1697.999 kb on - strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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1,694,916 + -1.0
1,694,942 + -0.1
1,694,942 + +0.0
1,694,942 + -0.3
1,694,943 - -0.0
1,695,041 + AMB_RS07895 0.27 +0.2
1,695,041 + AMB_RS07895 0.27 +0.3
1,695,042 - AMB_RS07895 0.27 +0.7
1,695,042 - AMB_RS07895 0.27 -0.2
1,695,042 - AMB_RS07895 0.27 -1.3
1,695,170 + AMB_RS07895 0.56 +0.8
1,695,244 - AMB_RS07895 0.72 -0.2
1,695,249 + AMB_RS07895 0.74 -0.8
1,695,250 - AMB_RS07895 0.74 -0.6
1,695,251 + AMB_RS07895 0.74 +0.9
1,695,252 - AMB_RS07895 0.74 +0.0
1,695,252 - AMB_RS07895 0.74 -0.5
1,695,252 - AMB_RS07895 0.74 -0.8
1,695,252 - AMB_RS07895 0.74 +1.3
1,695,727 + AMB_RS07900 0.68 -0.4
1,695,727 + AMB_RS07900 0.68 -0.5
1,695,728 - AMB_RS07900 0.69 -0.8
1,696,571 + AMB_RS07905 0.53 -1.5
1,696,571 + AMB_RS07905 0.53 +0.9
1,696,571 + AMB_RS07905 0.53 +0.8
1,696,571 + AMB_RS07905 0.53 -1.6
1,696,572 - AMB_RS07905 0.53 -0.6
1,696,572 - AMB_RS07905 0.53 -0.7
1,696,572 - AMB_RS07905 0.53 -1.4
1,696,657 + AMB_RS07905 0.59 -1.1
1,696,658 - AMB_RS07905 0.59 +1.1
1,697,311 + +0.3
1,697,320 + -0.5
1,697,437 + AMB_RS07910 0.16 -1.0
1,697,437 + AMB_RS07910 0.16 -0.1
1,697,437 + AMB_RS07910 0.16 +0.3
1,697,437 + AMB_RS07910 0.16 +0.6
1,697,437 + AMB_RS07910 0.16 -0.4
1,697,437 + AMB_RS07910 0.16 -0.5
1,697,437 + AMB_RS07910 0.16 +0.8
1,697,438 - AMB_RS07910 0.16 -0.4
1,697,438 - AMB_RS07910 0.16 -0.6
1,697,438 - AMB_RS07910 0.16 -0.4
1,697,438 - AMB_RS07910 0.16 -0.7
1,697,438 - AMB_RS07910 0.16 -1.0
1,697,608 + AMB_RS07910 0.28 -0.7
1,697,608 + AMB_RS07910 0.28 +0.9
1,697,644 + AMB_RS07910 0.31 -1.1
1,697,645 - AMB_RS07910 0.31 +0.2
1,697,645 - AMB_RS07910 0.31 -0.1
1,697,786 - AMB_RS07910 0.41 +0.4
1,697,999 - AMB_RS07910 0.57 +1.1
1,698,011 + AMB_RS07910 0.58 -0.3
1,698,011 + AMB_RS07910 0.58 -0.7
1,698,011 + AMB_RS07910 0.58 -0.5
1,698,012 - AMB_RS07910 0.58 -0.3
1,698,012 - AMB_RS07910 0.58 -0.2

Or see this region's nucleotide sequence