Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06925

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06920 and AMB_RS06925 are separated by 210 nucleotidesAMB_RS06925 and AMB_RS06930 overlap by 54 nucleotides AMB_RS06920: AMB_RS06920 - squalene--hopene cyclase, at 1,482,658 to 1,484,612 _RS06920 AMB_RS06925: AMB_RS06925 - nucleoside phosphorylase, at 1,484,823 to 1,485,473 _RS06925 AMB_RS06930: AMB_RS06930 - hopanoid biosynthesis associated radical SAM protein HpnH, at 1,485,420 to 1,486,571 _RS06930 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -1 0 1at 1484.807 kb on + strandat 1485.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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1,484,807 + -1.1
1,485,506 - +0.4

Or see this region's nucleotide sequence