Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04555

Experiment: 30_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04550 and AMB_RS04555 overlap by 4 nucleotidesAMB_RS04555 and AMB_RS04560 are separated by 87 nucleotides AMB_RS04550: AMB_RS04550 - C4-dicarboxylate ABC transporter permease, at 952,704 to 953,987 _RS04550 AMB_RS04555: AMB_RS04555 - TRAP transporter small permease, at 953,984 to 954,682 _RS04555 AMB_RS04560: AMB_RS04560 - C4-dicarboxylate ABC transporter, at 954,770 to 955,783 _RS04560 Position (kb) 953 954 955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.149 kb on + strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.150 kb on - strand, within AMB_RS04550at 953.214 kb on - strand, within AMB_RS04550at 953.221 kb on + strand, within AMB_RS04550at 953.222 kb on - strand, within AMB_RS04550at 953.222 kb on - strand, within AMB_RS04550at 953.294 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.296 kb on + strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.297 kb on - strand, within AMB_RS04550at 953.395 kb on + strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.396 kb on - strand, within AMB_RS04550at 953.416 kb on + strand, within AMB_RS04550at 953.417 kb on - strand, within AMB_RS04550at 953.512 kb on + strand, within AMB_RS04550at 953.513 kb on - strand, within AMB_RS04550at 954.225 kb on + strand, within AMB_RS04555at 954.226 kb on - strand, within AMB_RS04555at 954.273 kb on + strand, within AMB_RS04555at 954.315 kb on + strand, within AMB_RS04555at 954.316 kb on - strand, within AMB_RS04555at 954.398 kb on + strand, within AMB_RS04555at 954.399 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.480 kb on + strand, within AMB_RS04555at 954.481 kb on - strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.568 kb on - strand, within AMB_RS04555at 954.591 kb on + strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.804 kb on + strandat 954.804 kb on + strandat 954.805 kb on - strandat 955.080 kb on + strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.192 kb on - strand, within AMB_RS04560at 955.350 kb on + strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.642 kb on - strand, within AMB_RS04560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
remove
953,149 + AMB_RS04550 0.35 +0.2
953,149 + AMB_RS04550 0.35 +0.1
953,149 + AMB_RS04550 0.35 +0.8
953,149 + AMB_RS04550 0.35 -2.3
953,150 - AMB_RS04550 0.35 +0.3
953,150 - AMB_RS04550 0.35 -0.2
953,150 - AMB_RS04550 0.35 -0.0
953,214 - AMB_RS04550 0.40 -0.8
953,221 + AMB_RS04550 0.40 +2.3
953,222 - AMB_RS04550 0.40 +0.1
953,222 - AMB_RS04550 0.40 -1.1
953,294 + AMB_RS04550 0.46 +0.3
953,296 + AMB_RS04550 0.46 -2.7
953,296 + AMB_RS04550 0.46 -0.4
953,296 + AMB_RS04550 0.46 +0.2
953,296 + AMB_RS04550 0.46 -0.7
953,296 + AMB_RS04550 0.46 -0.2
953,296 + AMB_RS04550 0.46 -1.0
953,296 + AMB_RS04550 0.46 -2.2
953,297 - AMB_RS04550 0.46 -0.0
953,297 - AMB_RS04550 0.46 -0.3
953,297 - AMB_RS04550 0.46 -0.4
953,297 - AMB_RS04550 0.46 +0.4
953,297 - AMB_RS04550 0.46 +0.8
953,297 - AMB_RS04550 0.46 -0.4
953,297 - AMB_RS04550 0.46 +0.6
953,297 - AMB_RS04550 0.46 +0.3
953,395 + AMB_RS04550 0.54 -0.1
953,396 - AMB_RS04550 0.54 -0.2
953,396 - AMB_RS04550 0.54 -1.6
953,396 - AMB_RS04550 0.54 -0.0
953,396 - AMB_RS04550 0.54 +0.1
953,416 + AMB_RS04550 0.55 +0.6
953,417 - AMB_RS04550 0.56 -0.5
953,512 + AMB_RS04550 0.63 -2.1
953,513 - AMB_RS04550 0.63 -0.0
954,225 + AMB_RS04555 0.34 +0.3
954,226 - AMB_RS04555 0.35 -1.8
954,273 + AMB_RS04555 0.41 +0.1
954,315 + AMB_RS04555 0.47 -0.2
954,316 - AMB_RS04555 0.47 -0.8
954,398 + AMB_RS04555 0.59 +0.2
954,399 - AMB_RS04555 0.59 -1.2
954,474 - AMB_RS04555 0.70 +0.1
954,474 - AMB_RS04555 0.70 +0.6
954,480 + AMB_RS04555 0.71 +0.1
954,481 - AMB_RS04555 0.71 +0.0
954,567 + AMB_RS04555 0.83 -0.6
954,567 + AMB_RS04555 0.83 +0.4
954,567 + AMB_RS04555 0.83 -1.4
954,568 - AMB_RS04555 0.84 -0.1
954,591 + AMB_RS04555 0.87 +0.8
954,592 - AMB_RS04555 0.87 -0.4
954,592 - AMB_RS04555 0.87 -0.9
954,804 + +2.4
954,804 + -1.1
954,805 - +1.1
955,080 + AMB_RS04560 0.31 +1.2
955,081 - AMB_RS04560 0.31 +0.1
955,081 - AMB_RS04560 0.31 +0.1
955,112 + AMB_RS04560 0.34 +0.1
955,112 + AMB_RS04560 0.34 +0.5
955,113 - AMB_RS04560 0.34 +0.7
955,113 - AMB_RS04560 0.34 +0.4
955,113 - AMB_RS04560 0.34 -0.0
955,134 + AMB_RS04560 0.36 +0.2
955,134 + AMB_RS04560 0.36 +0.4
955,134 + AMB_RS04560 0.36 -1.2
955,134 + AMB_RS04560 0.36 +0.2
955,134 + AMB_RS04560 0.36 +0.0
955,134 + AMB_RS04560 0.36 +0.9
955,135 - AMB_RS04560 0.36 +0.4
955,135 - AMB_RS04560 0.36 -0.5
955,135 - AMB_RS04560 0.36 +0.0
955,135 - AMB_RS04560 0.36 +0.3
955,135 - AMB_RS04560 0.36 -0.2
955,135 - AMB_RS04560 0.36 +0.2
955,135 - AMB_RS04560 0.36 +0.1
955,135 - AMB_RS04560 0.36 +0.3
955,191 + AMB_RS04560 0.42 +0.3
955,191 + AMB_RS04560 0.42 +0.8
955,192 - AMB_RS04560 0.42 -0.4
955,350 + AMB_RS04560 0.57 +0.4
955,351 - AMB_RS04560 0.57 +0.7
955,351 - AMB_RS04560 0.57 -0.7
955,452 + AMB_RS04560 0.67 +0.2
955,452 + AMB_RS04560 0.67 +0.4
955,452 + AMB_RS04560 0.67 +0.3
955,452 + AMB_RS04560 0.67 -0.9
955,452 + AMB_RS04560 0.67 +0.7
955,453 - AMB_RS04560 0.67 +0.1
955,453 - AMB_RS04560 0.67 -3.2
955,453 - AMB_RS04560 0.67 +0.3
955,453 - AMB_RS04560 0.67 -0.9
955,453 - AMB_RS04560 0.67 +0.2
955,453 - AMB_RS04560 0.67 +0.1
955,453 - AMB_RS04560 0.67 -0.5
955,453 - AMB_RS04560 0.67 +0.1
955,453 - AMB_RS04560 0.67 +0.0
955,453 - AMB_RS04560 0.67 -1.5
955,569 + AMB_RS04560 0.79 +0.2
955,569 + AMB_RS04560 0.79 -1.7
955,569 + AMB_RS04560 0.79 -0.5
955,570 - AMB_RS04560 0.79 -0.4
955,570 - AMB_RS04560 0.79 -1.1
955,570 - AMB_RS04560 0.79 +0.2
955,570 - AMB_RS04560 0.79 +0.2
955,587 + AMB_RS04560 0.81 +0.3
955,587 + AMB_RS04560 0.81 -0.3
955,642 - AMB_RS04560 0.86 +0.9

Or see this region's nucleotide sequence