Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04450

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04435 and AMB_RS04440 are separated by 177 nucleotidesAMB_RS04440 and AMB_RS04445 are separated by 24 nucleotidesAMB_RS04445 and AMB_RS04450 are separated by 84 nucleotidesAMB_RS04450 and AMB_RS04455 are separated by 10 nucleotides AMB_RS04435: AMB_RS04435 - hypothetical protein, at 930,237 to 931,745 _RS04435 AMB_RS04440: AMB_RS04440 - hypothetical protein, at 931,923 to 932,114 _RS04440 AMB_RS04445: AMB_RS04445 - CBS domain-containing protein, at 932,139 to 932,579 _RS04445 AMB_RS04450: AMB_RS04450 - ankyrin repeat domain-containing protein, at 932,664 to 933,629 _RS04450 AMB_RS04455: AMB_RS04455 - energy-dependent translational throttle protein EttA, at 933,640 to 935,319 _RS04455 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.823 kb on + strandat 931.823 kb on + strandat 931.824 kb on - strandat 931.824 kb on - strandat 931.864 kb on + strandat 931.889 kb on + strandat 931.889 kb on + strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.920 kb on + strandat 931.986 kb on + strand, within AMB_RS04440at 932.112 kb on + strandat 932.158 kb on + strandat 932.159 kb on - strandat 932.668 kb on + strandat 932.668 kb on + strandat 932.669 kb on - strandat 932.669 kb on - strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.728 kb on + strandat 932.729 kb on - strandat 932.729 kb on - strandat 933.112 kb on + strand, within AMB_RS04450at 933.113 kb on - strand, within AMB_RS04450at 933.113 kb on - strand, within AMB_RS04450at 933.113 kb on - strand, within AMB_RS04450at 933.193 kb on + strand, within AMB_RS04450at 933.193 kb on + strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.194 kb on - strand, within AMB_RS04450at 933.248 kb on - strand, within AMB_RS04450at 933.618 kb on - strandat 933.659 kb on + strandat 933.660 kb on - strandat 933.660 kb on - strandat 933.660 kb on - strandat 933.660 kb on - strandat 933.719 kb on + strandat 933.719 kb on + strandat 933.719 kb on + strandat 933.720 kb on - strandat 933.720 kb on - strandat 933.720 kb on - strandat 933.720 kb on - strandat 933.720 kb on - strandat 933.720 kb on - strandat 933.728 kb on + strandat 933.728 kb on + strandat 933.728 kb on + strandat 933.729 kb on - strandat 933.729 kb on - strandat 934.028 kb on + strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.140 kb on - strand, within AMB_RS04455at 934.292 kb on + strand, within AMB_RS04455at 934.292 kb on + strand, within AMB_RS04455at 934.292 kb on + strand, within AMB_RS04455at 934.292 kb on + strand, within AMB_RS04455at 934.292 kb on + strand, within AMB_RS04455at 934.293 kb on - strand, within AMB_RS04455at 934.293 kb on - strand, within AMB_RS04455at 934.293 kb on - strand, within AMB_RS04455at 934.438 kb on - strand, within AMB_RS04455at 934.438 kb on - strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.577 kb on + strand, within AMB_RS04455at 934.578 kb on - strand, within AMB_RS04455at 934.578 kb on - strand, within AMB_RS04455at 934.589 kb on + strand, within AMB_RS04455at 934.590 kb on - strand, within AMB_RS04455at 934.590 kb on - strand, within AMB_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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931,823 + -1.3
931,823 + -2.0
931,824 - -1.7
931,824 - -2.0
931,864 + -0.7
931,889 + -0.8
931,889 + -1.5
931,890 - -0.2
931,890 - -0.1
931,890 - +1.0
931,890 - -1.1
931,890 - -0.1
931,920 + -0.7
931,986 + AMB_RS04440 0.33 +1.9
932,112 + -0.6
932,158 + -1.3
932,159 - -0.6
932,668 + -0.6
932,668 + -0.5
932,669 - -0.1
932,669 - -0.2
932,670 + -2.8
932,670 + -1.5
932,670 + -1.3
932,670 + +0.0
932,670 + +0.3
932,671 - -1.3
932,671 - +0.3
932,671 - -0.3
932,671 - +0.1
932,728 + -0.5
932,729 - +1.0
932,729 - +0.8
933,112 + AMB_RS04450 0.46 -0.5
933,113 - AMB_RS04450 0.46 -0.2
933,113 - AMB_RS04450 0.46 +0.6
933,113 - AMB_RS04450 0.46 -0.3
933,193 + AMB_RS04450 0.55 +0.8
933,193 + AMB_RS04450 0.55 +0.1
933,194 - AMB_RS04450 0.55 -0.4
933,194 - AMB_RS04450 0.55 +0.3
933,194 - AMB_RS04450 0.55 -1.1
933,194 - AMB_RS04450 0.55 +0.5
933,194 - AMB_RS04450 0.55 -0.7
933,194 - AMB_RS04450 0.55 +0.5
933,194 - AMB_RS04450 0.55 +0.8
933,194 - AMB_RS04450 0.55 -0.7
933,248 - AMB_RS04450 0.60 +1.9
933,618 - -0.2
933,659 + -0.2
933,660 - +1.4
933,660 - +0.0
933,660 - +0.2
933,660 - +0.3
933,719 + +0.1
933,719 + +0.1
933,719 + -0.4
933,720 - -0.6
933,720 - -0.6
933,720 - -0.6
933,720 - -0.5
933,720 - -0.3
933,720 - +0.2
933,728 + -0.2
933,728 + -0.7
933,728 + +0.3
933,729 - -0.8
933,729 - -0.7
934,028 + AMB_RS04455 0.23 -1.5
934,140 - AMB_RS04455 0.30 -0.6
934,140 - AMB_RS04455 0.30 +0.8
934,140 - AMB_RS04455 0.30 -0.0
934,140 - AMB_RS04455 0.30 -1.7
934,140 - AMB_RS04455 0.30 -2.0
934,140 - AMB_RS04455 0.30 -0.6
934,292 + AMB_RS04455 0.39 -1.7
934,292 + AMB_RS04455 0.39 -0.4
934,292 + AMB_RS04455 0.39 -2.9
934,292 + AMB_RS04455 0.39 +1.0
934,292 + AMB_RS04455 0.39 -1.1
934,293 - AMB_RS04455 0.39 +0.2
934,293 - AMB_RS04455 0.39 -3.6
934,293 - AMB_RS04455 0.39 -1.1
934,438 - AMB_RS04455 0.47 +0.4
934,438 - AMB_RS04455 0.47 +0.3
934,577 + AMB_RS04455 0.56 -1.0
934,577 + AMB_RS04455 0.56 -1.3
934,577 + AMB_RS04455 0.56 +0.6
934,577 + AMB_RS04455 0.56 +1.1
934,577 + AMB_RS04455 0.56 -3.0
934,577 + AMB_RS04455 0.56 -1.5
934,577 + AMB_RS04455 0.56 -1.0
934,577 + AMB_RS04455 0.56 +0.4
934,577 + AMB_RS04455 0.56 -0.6
934,577 + AMB_RS04455 0.56 +0.8
934,578 - AMB_RS04455 0.56 +1.3
934,578 - AMB_RS04455 0.56 -0.1
934,589 + AMB_RS04455 0.56 -2.4
934,590 - AMB_RS04455 0.57 +0.7
934,590 - AMB_RS04455 0.57 -0.4

Or see this region's nucleotide sequence