Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03970 and AMB_RS03975 overlap by 4 nucleotides AMB_RS03975 and AMB_RS03980 are separated by 90 nucleotides AMB_RS03980 and AMB_RS03985 are separated by 65 nucleotides
AMB_RS03970: AMB_RS03970 - hypothetical protein, at 832,151 to 833,413
_RS03970
AMB_RS03975: AMB_RS03975 - hypothetical protein, at 833,410 to 834,744
_RS03975
AMB_RS03980: AMB_RS03980 - serine/threonine protein phosphatase, at 834,835 to 835,623
_RS03980
AMB_RS03985: AMB_RS03985 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 835,689 to 837,155
_RS03985
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 832.425 kb on + strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.488 kb on + strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.164 kb on - strand, within AMB_RS03970 at 833.164 kb on - strand, within AMB_RS03970 at 833.237 kb on - strand, within AMB_RS03970 at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.523 kb on + strand at 833.524 kb on - strand at 833.750 kb on + strand, within AMB_RS03975 at 833.751 kb on - strand, within AMB_RS03975 at 833.762 kb on + strand, within AMB_RS03975 at 833.763 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 834.301 kb on + strand, within AMB_RS03975 at 834.357 kb on - strand, within AMB_RS03975 at 834.375 kb on - strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.416 kb on + strand, within AMB_RS03975 at 834.416 kb on + strand, within AMB_RS03975 at 834.417 kb on - strand, within AMB_RS03975 at 834.417 kb on - strand, within AMB_RS03975 at 834.455 kb on + strand, within AMB_RS03975 at 834.456 kb on - strand, within AMB_RS03975 at 834.456 kb on - strand, within AMB_RS03975 at 834.456 kb on - strand, within AMB_RS03975 at 834.456 kb on - strand, within AMB_RS03975 at 834.683 kb on + strand at 834.684 kb on - strand at 834.684 kb on - strand at 834.684 kb on - strand at 834.813 kb on - strand at 834.813 kb on - strand at 834.813 kb on - strand at 834.813 kb on - strand at 834.813 kb on - strand at 834.813 kb on - strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.814 kb on + strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.815 kb on - strand at 834.816 kb on + strand at 834.816 kb on + strand at 834.816 kb on + strand at 834.816 kb on + strand at 834.816 kb on + strand at 834.816 kb on + strand at 834.817 kb on - strand at 834.817 kb on - strand at 834.817 kb on - strand at 834.846 kb on + strand at 834.882 kb on - strand at 834.882 kb on - strand at 834.931 kb on + strand, within AMB_RS03980 at 834.931 kb on + strand, within AMB_RS03980 at 834.931 kb on + strand, within AMB_RS03980 at 834.932 kb on - strand, within AMB_RS03980 at 834.932 kb on - strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.240 kb on + strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.241 kb on - strand, within AMB_RS03980 at 835.276 kb on + strand, within AMB_RS03980 at 835.276 kb on + strand, within AMB_RS03980 at 835.369 kb on + strand, within AMB_RS03980 at 835.369 kb on + strand, within AMB_RS03980 at 835.370 kb on - strand, within AMB_RS03980 at 835.370 kb on - strand, within AMB_RS03980 at 835.370 kb on - strand, within AMB_RS03980 at 835.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 832,425 + AMB_RS03970 0.22 +0.6 832,426 - AMB_RS03970 0.22 +0.3 832,426 - AMB_RS03970 0.22 -0.7 832,488 + AMB_RS03970 0.27 -0.0 832,489 - AMB_RS03970 0.27 -0.7 832,489 - AMB_RS03970 0.27 +0.6 832,489 - AMB_RS03970 0.27 -0.1 833,025 + AMB_RS03970 0.69 +0.3 833,025 + AMB_RS03970 0.69 +0.6 833,025 + AMB_RS03970 0.69 -0.3 833,025 + AMB_RS03970 0.69 +0.9 833,025 + AMB_RS03970 0.69 -0.8 833,026 - AMB_RS03970 0.69 -0.4 833,026 - AMB_RS03970 0.69 -0.0 833,026 - AMB_RS03970 0.69 +0.5 833,043 + AMB_RS03970 0.71 +0.0 833,043 + AMB_RS03970 0.71 -0.0 833,043 + AMB_RS03970 0.71 +0.7 833,043 + AMB_RS03970 0.71 +0.2 833,043 + AMB_RS03970 0.71 -0.9 833,043 + AMB_RS03970 0.71 -0.4 833,043 + AMB_RS03970 0.71 -1.1 833,044 - AMB_RS03970 0.71 -0.7 833,044 - AMB_RS03970 0.71 -0.3 833,163 + AMB_RS03970 0.80 -0.5 833,163 + AMB_RS03970 0.80 -0.7 833,163 + AMB_RS03970 0.80 -1.0 833,164 - AMB_RS03970 0.80 -0.8 833,164 - AMB_RS03970 0.80 -0.2 833,237 - AMB_RS03970 0.86 +0.1 833,346 + -0.1 833,346 + -0.4 833,346 + -0.3 833,346 + -3.7 833,346 + +0.5 833,523 + +0.5 833,524 - +0.4 833,750 + AMB_RS03975 0.25 -0.1 833,751 - AMB_RS03975 0.26 -0.3 833,762 + AMB_RS03975 0.26 -0.8 833,763 - AMB_RS03975 0.26 +0.5 833,841 - AMB_RS03975 0.32 -0.5 833,841 - AMB_RS03975 0.32 -0.3 833,841 - AMB_RS03975 0.32 -0.7 834,301 + AMB_RS03975 0.67 -3.3 834,357 - AMB_RS03975 0.71 -0.3 834,375 - AMB_RS03975 0.72 -0.0 834,377 + AMB_RS03975 0.72 +0.6 834,377 + AMB_RS03975 0.72 -1.5 834,377 + AMB_RS03975 0.72 -0.7 834,377 + AMB_RS03975 0.72 +0.2 834,377 + AMB_RS03975 0.72 -0.5 834,378 - AMB_RS03975 0.73 -0.1 834,378 - AMB_RS03975 0.73 -0.3 834,378 - AMB_RS03975 0.73 -2.1 834,378 - AMB_RS03975 0.73 +0.8 834,416 + AMB_RS03975 0.75 +0.4 834,416 + AMB_RS03975 0.75 -0.7 834,417 - AMB_RS03975 0.75 +0.6 834,417 - AMB_RS03975 0.75 +0.5 834,455 + AMB_RS03975 0.78 -1.0 834,456 - AMB_RS03975 0.78 +0.1 834,456 - AMB_RS03975 0.78 +0.8 834,456 - AMB_RS03975 0.78 -0.2 834,456 - AMB_RS03975 0.78 +0.5 834,683 + -0.6 834,684 - -0.7 834,684 - -0.2 834,684 - -0.1 834,813 - -1.3 834,813 - -0.8 834,813 - +0.2 834,813 - -0.7 834,813 - -0.8 834,813 - +0.8 834,814 + -0.6 834,814 + -0.4 834,814 + -0.9 834,814 + -0.5 834,814 + +0.3 834,814 + -2.1 834,814 + -0.6 834,814 + +1.6 834,814 + -0.9 834,814 + -0.1 834,814 + -2.1 834,814 + -0.4 834,814 + -0.0 834,815 - +0.4 834,815 - +0.6 834,815 - -2.7 834,815 - +1.7 834,815 - -1.8 834,815 - +0.3 834,815 - -0.2 834,815 - -0.2 834,815 - +2.6 834,815 - -0.2 834,815 - -0.6 834,815 - -0.4 834,816 + -0.1 834,816 + -0.4 834,816 + -0.1 834,816 + -0.5 834,816 + +0.1 834,816 + -2.1 834,817 - -0.6 834,817 - +0.5 834,817 - +0.8 834,846 + -0.6 834,882 - -0.1 834,882 - -1.2 834,931 + AMB_RS03980 0.12 +1.0 834,931 + AMB_RS03980 0.12 -0.5 834,931 + AMB_RS03980 0.12 -0.8 834,932 - AMB_RS03980 0.12 +0.1 834,932 - AMB_RS03980 0.12 -0.1 835,240 + AMB_RS03980 0.51 -0.3 835,240 + AMB_RS03980 0.51 +0.8 835,240 + AMB_RS03980 0.51 -2.0 835,240 + AMB_RS03980 0.51 -0.0 835,240 + AMB_RS03980 0.51 -1.7 835,240 + AMB_RS03980 0.51 -0.6 835,240 + AMB_RS03980 0.51 +2.3 835,240 + AMB_RS03980 0.51 +0.3 835,241 - AMB_RS03980 0.51 +0.3 835,241 - AMB_RS03980 0.51 -1.3 835,241 - AMB_RS03980 0.51 -1.3 835,241 - AMB_RS03980 0.51 +0.6 835,241 - AMB_RS03980 0.51 -0.3 835,241 - AMB_RS03980 0.51 -0.2 835,241 - AMB_RS03980 0.51 +0.5 835,276 + AMB_RS03980 0.56 +0.3 835,276 + AMB_RS03980 0.56 -0.0 835,369 + AMB_RS03980 0.68 +0.2 835,369 + AMB_RS03980 0.68 +0.2 835,370 - AMB_RS03980 0.68 -0.2 835,370 - AMB_RS03980 0.68 +0.7 835,370 - AMB_RS03980 0.68 +0.1 835,617 + +0.3
Or see this region's nucleotide sequence