Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03770

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03765 and AMB_RS03770 are separated by 137 nucleotidesAMB_RS03770 and AMB_RS03775 are separated by 85 nucleotidesAMB_RS03775 and AMB_RS03780 are separated by 42 nucleotidesAMB_RS03780 and AMB_RS03785 are separated by 103 nucleotides AMB_RS03765: AMB_RS03765 - hypothetical protein, at 797,122 to 798,321 _RS03765 AMB_RS03770: AMB_RS03770 - hypothetical protein, at 798,459 to 798,695 _RS03770 AMB_RS03775: AMB_RS03775 - hypothetical protein, at 798,781 to 799,044 _RS03775 AMB_RS03780: AMB_RS03780 - hypothetical protein, at 799,087 to 799,332 _RS03780 AMB_RS03785: AMB_RS03785 - hemerythrin, at 799,436 to 799,840 _RS03785 Position (kb) 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 797.502 kb on + strand, within AMB_RS03765at 797.502 kb on + strand, within AMB_RS03765at 797.503 kb on - strand, within AMB_RS03765at 797.557 kb on + strand, within AMB_RS03765at 797.557 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.575 kb on + strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.576 kb on - strand, within AMB_RS03765at 797.707 kb on + strand, within AMB_RS03765at 797.707 kb on + strand, within AMB_RS03765at 797.747 kb on - strand, within AMB_RS03765at 797.747 kb on - strand, within AMB_RS03765at 797.747 kb on - strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.749 kb on + strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.750 kb on - strand, within AMB_RS03765at 797.803 kb on + strand, within AMB_RS03765at 797.804 kb on - strand, within AMB_RS03765at 797.804 kb on - strand, within AMB_RS03765at 797.876 kb on - strand, within AMB_RS03765at 797.913 kb on + strand, within AMB_RS03765at 797.913 kb on + strand, within AMB_RS03765at 797.914 kb on - strand, within AMB_RS03765at 797.935 kb on + strand, within AMB_RS03765at 797.935 kb on + strand, within AMB_RS03765at 797.936 kb on - strand, within AMB_RS03765at 797.936 kb on - strand, within AMB_RS03765at 797.997 kb on + strand, within AMB_RS03765at 798.341 kb on + strandat 798.341 kb on + strandat 798.341 kb on + strandat 798.342 kb on - strandat 798.342 kb on - strandat 798.342 kb on - strandat 798.347 kb on - strandat 798.368 kb on + strandat 798.368 kb on + strandat 798.368 kb on + strandat 798.369 kb on - strandat 798.371 kb on + strandat 798.371 kb on + strandat 798.371 kb on + strandat 798.371 kb on + strandat 798.407 kb on + strandat 798.408 kb on - strandat 798.427 kb on + strandat 798.465 kb on + strandat 798.466 kb on - strandat 798.474 kb on - strandat 798.474 kb on - strandat 798.474 kb on - strandat 798.693 kb on + strandat 798.694 kb on - strandat 798.887 kb on + strand, within AMB_RS03775at 798.887 kb on + strand, within AMB_RS03775at 798.887 kb on + strand, within AMB_RS03775at 798.887 kb on + strand, within AMB_RS03775at 798.888 kb on - strand, within AMB_RS03775at 799.053 kb on - strandat 799.063 kb on + strandat 799.063 kb on + strandat 799.063 kb on + strandat 799.064 kb on - strandat 799.064 kb on - strandat 799.069 kb on + strandat 799.070 kb on - strandat 799.070 kb on - strandat 799.113 kb on + strand, within AMB_RS03780at 799.113 kb on + strand, within AMB_RS03780at 799.114 kb on - strand, within AMB_RS03780at 799.241 kb on + strand, within AMB_RS03780at 799.354 kb on - strandat 799.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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797,502 + AMB_RS03765 0.32 +0.1
797,502 + AMB_RS03765 0.32 -1.0
797,503 - AMB_RS03765 0.32 -0.9
797,557 + AMB_RS03765 0.36 -0.4
797,557 + AMB_RS03765 0.36 -0.3
797,575 + AMB_RS03765 0.38 -0.3
797,575 + AMB_RS03765 0.38 -0.3
797,575 + AMB_RS03765 0.38 +0.7
797,575 + AMB_RS03765 0.38 -0.5
797,575 + AMB_RS03765 0.38 +0.3
797,575 + AMB_RS03765 0.38 -1.1
797,575 + AMB_RS03765 0.38 -0.1
797,575 + AMB_RS03765 0.38 -0.2
797,575 + AMB_RS03765 0.38 -0.1
797,575 + AMB_RS03765 0.38 -0.5
797,576 - AMB_RS03765 0.38 +0.0
797,576 - AMB_RS03765 0.38 +0.3
797,576 - AMB_RS03765 0.38 +1.0
797,576 - AMB_RS03765 0.38 -3.7
797,576 - AMB_RS03765 0.38 -2.2
797,576 - AMB_RS03765 0.38 -1.3
797,576 - AMB_RS03765 0.38 -0.6
797,707 + AMB_RS03765 0.49 -2.7
797,707 + AMB_RS03765 0.49 -0.6
797,747 - AMB_RS03765 0.52 -1.0
797,747 - AMB_RS03765 0.52 -0.5
797,747 - AMB_RS03765 0.52 +0.1
797,749 + AMB_RS03765 0.52 -0.5
797,749 + AMB_RS03765 0.52 -0.7
797,749 + AMB_RS03765 0.52 +0.2
797,749 + AMB_RS03765 0.52 +0.0
797,749 + AMB_RS03765 0.52 +0.1
797,749 + AMB_RS03765 0.52 -1.6
797,749 + AMB_RS03765 0.52 +0.1
797,749 + AMB_RS03765 0.52 +0.3
797,749 + AMB_RS03765 0.52 -0.1
797,749 + AMB_RS03765 0.52 -0.5
797,750 - AMB_RS03765 0.52 -0.7
797,750 - AMB_RS03765 0.52 -2.7
797,750 - AMB_RS03765 0.52 -0.4
797,750 - AMB_RS03765 0.52 +0.4
797,750 - AMB_RS03765 0.52 +0.3
797,750 - AMB_RS03765 0.52 +0.1
797,750 - AMB_RS03765 0.52 -0.5
797,750 - AMB_RS03765 0.52 -0.8
797,803 + AMB_RS03765 0.57 +0.3
797,804 - AMB_RS03765 0.57 -0.1
797,804 - AMB_RS03765 0.57 +0.0
797,876 - AMB_RS03765 0.63 +0.2
797,913 + AMB_RS03765 0.66 +1.5
797,913 + AMB_RS03765 0.66 -0.4
797,914 - AMB_RS03765 0.66 +0.3
797,935 + AMB_RS03765 0.68 -0.3
797,935 + AMB_RS03765 0.68 -0.1
797,936 - AMB_RS03765 0.68 -0.1
797,936 - AMB_RS03765 0.68 -0.4
797,997 + AMB_RS03765 0.73 -0.3
798,341 + +0.0
798,341 + +0.3
798,341 + +0.3
798,342 - -0.5
798,342 - -0.9
798,342 - -0.7
798,347 - -0.5
798,368 + +0.3
798,368 + -0.1
798,368 + +0.1
798,369 - -0.1
798,371 + -0.6
798,371 + -0.2
798,371 + +0.0
798,371 + +0.0
798,407 + -0.4
798,408 - -1.0
798,427 + -1.7
798,465 + -1.2
798,466 - -0.1
798,474 - -0.2
798,474 - +0.0
798,474 - -0.1
798,693 + -2.9
798,694 - +0.6
798,887 + AMB_RS03775 0.40 +0.5
798,887 + AMB_RS03775 0.40 +0.6
798,887 + AMB_RS03775 0.40 +0.6
798,887 + AMB_RS03775 0.40 -1.3
798,888 - AMB_RS03775 0.41 -0.3
799,053 - +0.5
799,063 + +0.5
799,063 + +2.4
799,063 + -0.4
799,064 - +0.6
799,064 - +0.2
799,069 + +0.0
799,070 - -0.7
799,070 - +0.6
799,113 + AMB_RS03780 0.11 +0.2
799,113 + AMB_RS03780 0.11 +0.1
799,114 - AMB_RS03780 0.11 +0.4
799,241 + AMB_RS03780 0.63 +0.8
799,354 - -0.3
799,396 + +0.1

Or see this region's nucleotide sequence