Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02925

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02920 and AMB_RS02925 are separated by 4 nucleotidesAMB_RS02925 and AMB_RS02930 are separated by 7 nucleotidesAMB_RS02930 and AMB_RS02935 are separated by 76 nucleotides AMB_RS02920: AMB_RS02920 - ATP-dependent protease, at 609,865 to 612,321 _RS02920 AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369 _RS02925 AMB_RS02930: AMB_RS02930 - hypothetical protein, at 613,377 to 613,901 _RS02930 AMB_RS02935: AMB_RS02935 - PAS domain-containing sensor histidine kinase, at 613,978 to 616,245 _RS02935 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1at 611.406 kb on + strand, within AMB_RS02920at 611.878 kb on + strand, within AMB_RS02920at 611.879 kb on - strand, within AMB_RS02920at 612.065 kb on + strand, within AMB_RS02920at 612.128 kb on - strandat 612.319 kb on + strandat 612.320 kb on - strandat 612.320 kb on - strandat 612.320 kb on - strandat 612.416 kb on + strandat 612.416 kb on + strandat 612.533 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.558 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.839 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.044 kb on - strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.539 kb on - strand, within AMB_RS02930at 613.539 kb on - strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.639 kb on + strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.730 kb on - strand, within AMB_RS02930at 613.852 kb on + strandat 613.852 kb on + strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.884 kb on + strandat 613.884 kb on + strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.922 kb on + strandat 613.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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611,406 + AMB_RS02920 0.63 +0.2
611,878 + AMB_RS02920 0.82 -0.3
611,879 - AMB_RS02920 0.82 +0.7
612,065 + AMB_RS02920 0.90 -0.4
612,128 - -0.5
612,319 + +0.6
612,320 - +0.3
612,320 - +0.3
612,320 - -1.9
612,416 + +0.3
612,416 + -1.4
612,533 + AMB_RS02925 0.20 +0.7
612,557 + AMB_RS02925 0.22 -0.2
612,557 + AMB_RS02925 0.22 -0.3
612,558 - AMB_RS02925 0.22 -0.3
612,678 - AMB_RS02925 0.34 -0.0
612,678 - AMB_RS02925 0.34 +0.6
612,839 + AMB_RS02925 0.49 -0.5
613,037 + AMB_RS02925 0.68 +1.3
613,037 + AMB_RS02925 0.68 -1.0
613,037 + AMB_RS02925 0.68 +0.0
613,037 + AMB_RS02925 0.68 -0.3
613,038 - AMB_RS02925 0.68 +1.0
613,038 - AMB_RS02925 0.68 -0.2
613,038 - AMB_RS02925 0.68 -0.5
613,038 - AMB_RS02925 0.68 -0.6
613,038 - AMB_RS02925 0.68 -0.1
613,038 - AMB_RS02925 0.68 -0.0
613,044 - AMB_RS02925 0.69 +1.1
613,181 + AMB_RS02925 0.82 +0.1
613,181 + AMB_RS02925 0.82 -0.2
613,181 + AMB_RS02925 0.82 -0.1
613,182 - AMB_RS02925 0.82 +0.3
613,182 - AMB_RS02925 0.82 -0.6
613,182 - AMB_RS02925 0.82 +1.5
613,182 - AMB_RS02925 0.82 +0.3
613,539 - AMB_RS02930 0.31 +0.0
613,539 - AMB_RS02930 0.31 -0.2
613,609 + AMB_RS02930 0.44 +0.6
613,609 + AMB_RS02930 0.44 -0.9
613,610 - AMB_RS02930 0.44 -0.2
613,610 - AMB_RS02930 0.44 -0.2
613,610 - AMB_RS02930 0.44 -1.2
613,610 - AMB_RS02930 0.44 +0.7
613,639 + AMB_RS02930 0.50 -0.9
613,640 - AMB_RS02930 0.50 -0.3
613,640 - AMB_RS02930 0.50 -1.2
613,640 - AMB_RS02930 0.50 -0.1
613,640 - AMB_RS02930 0.50 -0.2
613,729 + AMB_RS02930 0.67 -0.3
613,729 + AMB_RS02930 0.67 +0.2
613,730 - AMB_RS02930 0.67 -1.5
613,852 + -1.0
613,852 + -0.2
613,853 - -2.0
613,853 - -0.5
613,853 - +0.4
613,853 - -0.8
613,884 + +0.6
613,884 + -0.0
613,885 - +0.8
613,885 - -0.3
613,885 - -1.4
613,885 - +0.5
613,922 + +0.7
613,922 + -0.6

Or see this region's nucleotide sequence