Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02600

Experiment: 30_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS02595 and AMB_RS02600 are separated by 22 nucleotidesAMB_RS02600 and AMB_RS02605 are separated by 11 nucleotides AMB_RS02595: AMB_RS02595 - flagellar hook protein FlgE, at 539,058 to 541,589 _RS02595 AMB_RS02600: AMB_RS02600 - flagellar hook capping protein, at 541,612 to 542,436 _RS02600 AMB_RS02605: AMB_RS02605 - flagellar hook-length control protein FliK, at 542,448 to 544,211 _RS02605 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.673 kb on + strand, within AMB_RS02595at 540.673 kb on + strand, within AMB_RS02595at 540.673 kb on + strand, within AMB_RS02595at 540.674 kb on - strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.748 kb on + strand, within AMB_RS02595at 540.749 kb on - strand, within AMB_RS02595at 540.749 kb on - strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.750 kb on + strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.751 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.809 kb on - strand, within AMB_RS02595at 540.898 kb on + strand, within AMB_RS02595at 540.899 kb on - strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.952 kb on + strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 540.953 kb on - strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.078 kb on + strand, within AMB_RS02595at 541.105 kb on + strand, within AMB_RS02595at 541.105 kb on + strand, within AMB_RS02595at 541.106 kb on - strand, within AMB_RS02595at 541.106 kb on - strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.117 kb on + strand, within AMB_RS02595at 541.118 kb on - strand, within AMB_RS02595at 541.118 kb on - strand, within AMB_RS02595at 541.198 kb on + strand, within AMB_RS02595at 541.198 kb on + strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.199 kb on - strand, within AMB_RS02595at 541.222 kb on + strand, within AMB_RS02595at 541.222 kb on + strand, within AMB_RS02595at 541.424 kb on - strandat 541.483 kb on + strandat 541.483 kb on + strandat 541.484 kb on - strandat 541.484 kb on - strandat 541.579 kb on + strandat 541.647 kb on + strandat 541.647 kb on + strandat 541.647 kb on + strandat 541.770 kb on + strand, within AMB_RS02600at 541.932 kb on - strand, within AMB_RS02600at 541.932 kb on - strand, within AMB_RS02600at 541.986 kb on + strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 541.987 kb on - strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.087 kb on + strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.088 kb on - strand, within AMB_RS02600at 542.156 kb on + strand, within AMB_RS02600at 542.156 kb on + strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.157 kb on - strand, within AMB_RS02600at 542.341 kb on - strand, within AMB_RS02600at 542.450 kb on - strandat 542.450 kb on - strandat 542.792 kb on + strand, within AMB_RS02605at 542.793 kb on - strand, within AMB_RS02605at 542.793 kb on - strand, within AMB_RS02605at 542.793 kb on - strand, within AMB_RS02605at 542.793 kb on - strand, within AMB_RS02605at 542.793 kb on - strand, within AMB_RS02605at 542.803 kb on + strand, within AMB_RS02605at 542.803 kb on + strand, within AMB_RS02605at 542.804 kb on - strand, within AMB_RS02605at 543.290 kb on + strand, within AMB_RS02605at 543.290 kb on + strand, within AMB_RS02605at 543.291 kb on - strand, within AMB_RS02605at 543.291 kb on - strand, within AMB_RS02605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
remove
540,673 + AMB_RS02595 0.64 -0.9
540,673 + AMB_RS02595 0.64 -0.5
540,673 + AMB_RS02595 0.64 -0.5
540,674 - AMB_RS02595 0.64 +0.4
540,748 + AMB_RS02595 0.67 -0.6
540,748 + AMB_RS02595 0.67 -0.5
540,748 + AMB_RS02595 0.67 +0.0
540,748 + AMB_RS02595 0.67 -0.1
540,748 + AMB_RS02595 0.67 +0.1
540,749 - AMB_RS02595 0.67 -2.3
540,749 - AMB_RS02595 0.67 +0.5
540,750 + AMB_RS02595 0.67 -0.9
540,750 + AMB_RS02595 0.67 -0.4
540,750 + AMB_RS02595 0.67 +1.7
540,751 - AMB_RS02595 0.67 -2.5
540,751 - AMB_RS02595 0.67 +0.2
540,751 - AMB_RS02595 0.67 -0.1
540,809 - AMB_RS02595 0.69 +0.1
540,809 - AMB_RS02595 0.69 -0.4
540,809 - AMB_RS02595 0.69 -0.3
540,898 + AMB_RS02595 0.73 -0.4
540,899 - AMB_RS02595 0.73 -0.2
540,952 + AMB_RS02595 0.75 +0.7
540,952 + AMB_RS02595 0.75 +1.6
540,952 + AMB_RS02595 0.75 -0.0
540,952 + AMB_RS02595 0.75 -3.1
540,952 + AMB_RS02595 0.75 -0.8
540,952 + AMB_RS02595 0.75 -2.1
540,953 - AMB_RS02595 0.75 -0.3
540,953 - AMB_RS02595 0.75 -0.8
540,953 - AMB_RS02595 0.75 -1.3
540,953 - AMB_RS02595 0.75 -0.8
541,078 + AMB_RS02595 0.80 -0.1
541,078 + AMB_RS02595 0.80 -0.8
541,078 + AMB_RS02595 0.80 -0.1
541,105 + AMB_RS02595 0.81 +1.0
541,105 + AMB_RS02595 0.81 +0.0
541,106 - AMB_RS02595 0.81 -1.7
541,106 - AMB_RS02595 0.81 -0.5
541,117 + AMB_RS02595 0.81 -0.4
541,117 + AMB_RS02595 0.81 -0.9
541,117 + AMB_RS02595 0.81 -0.8
541,117 + AMB_RS02595 0.81 -0.7
541,117 + AMB_RS02595 0.81 -1.1
541,118 - AMB_RS02595 0.81 -3.1
541,118 - AMB_RS02595 0.81 -0.4
541,198 + AMB_RS02595 0.85 -0.0
541,198 + AMB_RS02595 0.85 +0.1
541,199 - AMB_RS02595 0.85 -0.3
541,199 - AMB_RS02595 0.85 +0.6
541,199 - AMB_RS02595 0.85 -0.3
541,199 - AMB_RS02595 0.85 -0.3
541,199 - AMB_RS02595 0.85 -2.0
541,222 + AMB_RS02595 0.85 +0.8
541,222 + AMB_RS02595 0.85 +0.5
541,424 - -0.9
541,483 + -0.7
541,483 + +0.7
541,484 - -1.0
541,484 - -0.1
541,579 + -0.1
541,647 + -0.8
541,647 + +0.7
541,647 + -0.2
541,770 + AMB_RS02600 0.19 +0.4
541,932 - AMB_RS02600 0.39 -1.0
541,932 - AMB_RS02600 0.39 -0.4
541,986 + AMB_RS02600 0.45 +0.5
541,987 - AMB_RS02600 0.45 -0.8
541,987 - AMB_RS02600 0.45 +0.0
541,987 - AMB_RS02600 0.45 -0.9
542,087 + AMB_RS02600 0.58 -0.1
542,087 + AMB_RS02600 0.58 -0.4
542,087 + AMB_RS02600 0.58 -0.2
542,087 + AMB_RS02600 0.58 -0.1
542,088 - AMB_RS02600 0.58 +1.0
542,088 - AMB_RS02600 0.58 -0.7
542,088 - AMB_RS02600 0.58 -0.5
542,088 - AMB_RS02600 0.58 -1.4
542,156 + AMB_RS02600 0.66 -0.2
542,156 + AMB_RS02600 0.66 -0.0
542,157 - AMB_RS02600 0.66 -0.1
542,157 - AMB_RS02600 0.66 -0.3
542,157 - AMB_RS02600 0.66 -1.3
542,341 - AMB_RS02600 0.88 -0.2
542,450 - -0.5
542,450 - -0.3
542,792 + AMB_RS02605 0.20 +0.4
542,793 - AMB_RS02605 0.20 +1.4
542,793 - AMB_RS02605 0.20 -0.2
542,793 - AMB_RS02605 0.20 -0.9
542,793 - AMB_RS02605 0.20 -0.3
542,793 - AMB_RS02605 0.20 -0.3
542,803 + AMB_RS02605 0.20 -0.8
542,803 + AMB_RS02605 0.20 +0.0
542,804 - AMB_RS02605 0.20 -1.3
543,290 + AMB_RS02605 0.48 +0.3
543,290 + AMB_RS02605 0.48 +0.5
543,291 - AMB_RS02605 0.48 +0.2
543,291 - AMB_RS02605 0.48 -0.1

Or see this region's nucleotide sequence