Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02210

Experiment: 30_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS02200 and AMB_RS02205 are separated by 61 nucleotidesAMB_RS02205 and AMB_RS02210 are separated by 164 nucleotidesAMB_RS02210 and AMB_RS02215 are separated by 7 nucleotidesAMB_RS02215 and AMB_RS02220 are separated by 78 nucleotides AMB_RS02200: AMB_RS02200 - hypothetical protein, at 465,580 to 466,455 _RS02200 AMB_RS02205: AMB_RS02205 - membrane protein, at 466,517 to 467,116 _RS02205 AMB_RS02210: AMB_RS02210 - DUF2786 domain-containing protein, at 467,281 to 467,967 _RS02210 AMB_RS02215: AMB_RS02215 - hypothetical protein, at 467,975 to 468,859 _RS02215 AMB_RS02220: AMB_RS02220 - tRNA-Leu, at 468,938 to 469,023 _RS02220 Position (kb) 467 468Strain fitness (log2 ratio) -2 -1 0 1 2at 466.615 kb on - strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.989 kb on + strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.990 kb on - strand, within AMB_RS02205at 466.992 kb on + strand, within AMB_RS02205at 466.992 kb on + strand, within AMB_RS02205at 466.993 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.020 kb on - strand, within AMB_RS02205at 467.100 kb on + strandat 467.100 kb on + strandat 467.101 kb on - strandat 467.101 kb on - strandat 467.101 kb on - strandat 467.119 kb on + strandat 467.228 kb on + strandat 467.229 kb on - strandat 467.270 kb on + strandat 467.271 kb on - strandat 467.273 kb on + strandat 467.405 kb on + strand, within AMB_RS02210at 467.405 kb on + strand, within AMB_RS02210at 467.406 kb on - strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.585 kb on + strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.586 kb on - strand, within AMB_RS02210at 467.627 kb on + strand, within AMB_RS02210at 467.628 kb on - strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.633 kb on + strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.634 kb on - strand, within AMB_RS02210at 467.675 kb on + strand, within AMB_RS02210at 467.675 kb on + strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210at 467.676 kb on - strand, within AMB_RS02210at 468.204 kb on + strand, within AMB_RS02215at 468.204 kb on + strand, within AMB_RS02215at 468.204 kb on + strand, within AMB_RS02215at 468.204 kb on + strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.205 kb on - strand, within AMB_RS02215at 468.630 kb on + strand, within AMB_RS02215at 468.631 kb on - strand, within AMB_RS02215at 468.631 kb on - strand, within AMB_RS02215at 468.631 kb on - strand, within AMB_RS02215at 468.631 kb on - strand, within AMB_RS02215at 468.678 kb on + strand, within AMB_RS02215at 468.699 kb on + strand, within AMB_RS02215at 468.699 kb on + strand, within AMB_RS02215at 468.699 kb on + strand, within AMB_RS02215at 468.700 kb on - strand, within AMB_RS02215at 468.700 kb on - strand, within AMB_RS02215at 468.700 kb on - strand, within AMB_RS02215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
remove
466,615 - AMB_RS02205 0.16 +0.3
466,989 + AMB_RS02205 0.79 -0.6
466,989 + AMB_RS02205 0.79 -1.9
466,989 + AMB_RS02205 0.79 +1.0
466,989 + AMB_RS02205 0.79 -0.6
466,990 - AMB_RS02205 0.79 +0.2
466,990 - AMB_RS02205 0.79 -0.8
466,990 - AMB_RS02205 0.79 +1.5
466,992 + AMB_RS02205 0.79 -2.0
466,992 + AMB_RS02205 0.79 -0.2
466,993 - AMB_RS02205 0.79 -0.1
467,020 - AMB_RS02205 0.84 -2.1
467,020 - AMB_RS02205 0.84 -0.3
467,020 - AMB_RS02205 0.84 -0.3
467,100 + +0.2
467,100 + -0.4
467,101 - -0.1
467,101 - -1.8
467,101 - -1.3
467,119 + -0.3
467,228 + -0.1
467,229 - -0.2
467,270 + -0.5
467,271 - -0.0
467,273 + -0.9
467,405 + AMB_RS02210 0.18 -0.3
467,405 + AMB_RS02210 0.18 -0.4
467,406 - AMB_RS02210 0.18 -0.7
467,585 + AMB_RS02210 0.44 +0.2
467,585 + AMB_RS02210 0.44 +0.1
467,585 + AMB_RS02210 0.44 +0.3
467,585 + AMB_RS02210 0.44 -2.3
467,585 + AMB_RS02210 0.44 -1.6
467,585 + AMB_RS02210 0.44 -0.2
467,585 + AMB_RS02210 0.44 -0.2
467,585 + AMB_RS02210 0.44 -1.8
467,585 + AMB_RS02210 0.44 -0.1
467,586 - AMB_RS02210 0.44 +0.5
467,586 - AMB_RS02210 0.44 -0.0
467,586 - AMB_RS02210 0.44 -1.0
467,586 - AMB_RS02210 0.44 -1.4
467,586 - AMB_RS02210 0.44 +0.1
467,586 - AMB_RS02210 0.44 +0.4
467,627 + AMB_RS02210 0.50 -0.8
467,628 - AMB_RS02210 0.51 +1.1
467,633 + AMB_RS02210 0.51 +0.7
467,633 + AMB_RS02210 0.51 -0.9
467,633 + AMB_RS02210 0.51 -0.3
467,633 + AMB_RS02210 0.51 -1.0
467,633 + AMB_RS02210 0.51 -0.6
467,633 + AMB_RS02210 0.51 -0.2
467,633 + AMB_RS02210 0.51 -0.5
467,633 + AMB_RS02210 0.51 -0.2
467,633 + AMB_RS02210 0.51 -0.5
467,633 + AMB_RS02210 0.51 -0.0
467,633 + AMB_RS02210 0.51 -0.3
467,634 - AMB_RS02210 0.51 -1.8
467,634 - AMB_RS02210 0.51 -1.1
467,634 - AMB_RS02210 0.51 -0.1
467,634 - AMB_RS02210 0.51 -0.4
467,675 + AMB_RS02210 0.57 +0.6
467,675 + AMB_RS02210 0.57 +0.1
467,676 - AMB_RS02210 0.57 +0.4
467,676 - AMB_RS02210 0.57 +0.2
467,676 - AMB_RS02210 0.57 +1.0
468,204 + AMB_RS02215 0.26 -0.7
468,204 + AMB_RS02215 0.26 -0.3
468,204 + AMB_RS02215 0.26 +1.9
468,204 + AMB_RS02215 0.26 -0.5
468,205 - AMB_RS02215 0.26 +0.4
468,205 - AMB_RS02215 0.26 +1.0
468,205 - AMB_RS02215 0.26 -0.6
468,205 - AMB_RS02215 0.26 -1.3
468,205 - AMB_RS02215 0.26 +1.4
468,205 - AMB_RS02215 0.26 -0.4
468,205 - AMB_RS02215 0.26 -1.5
468,630 + AMB_RS02215 0.74 -0.7
468,631 - AMB_RS02215 0.74 -0.5
468,631 - AMB_RS02215 0.74 -0.3
468,631 - AMB_RS02215 0.74 -0.1
468,631 - AMB_RS02215 0.74 -0.6
468,678 + AMB_RS02215 0.79 -0.4
468,699 + AMB_RS02215 0.82 +0.7
468,699 + AMB_RS02215 0.82 +0.1
468,699 + AMB_RS02215 0.82 +0.9
468,700 - AMB_RS02215 0.82 +1.2
468,700 - AMB_RS02215 0.82 -0.4
468,700 - AMB_RS02215 0.82 +0.3

Or see this region's nucleotide sequence