Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01800 and AMB_RS01805 overlap by 4 nucleotides AMB_RS01805 and AMB_RS01810 overlap by 7 nucleotides AMB_RS01810 and AMB_RS01815 overlap by 4 nucleotides AMB_RS01815 and AMB_RS01820 overlap by 1 nucleotides
AMB_RS01800: AMB_RS01800 - hypothetical protein, at 388,712 to 389,089
_RS01800
AMB_RS01805: AMB_RS01805 - hypothetical protein, at 389,086 to 390,015
_RS01805
AMB_RS01810: AMB_RS01810 - DNA helicase, at 390,009 to 391,580
_RS01810
AMB_RS01815: AMB_RS01815 - hypothetical protein, at 391,577 to 391,933
_RS01815
AMB_RS01820: AMB_RS01820 - DUF3987 domain-containing protein, at 391,933 to 394,206
_RS01820
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 389.015 kb on + strand, within AMB_RS01800 at 389.016 kb on - strand, within AMB_RS01800 at 389.085 kb on + strand at 389.085 kb on + strand at 389.086 kb on - strand at 389.086 kb on - strand at 389.086 kb on - strand at 389.110 kb on - strand at 389.131 kb on + strand at 389.132 kb on - strand at 389.132 kb on - strand at 389.132 kb on - strand at 389.140 kb on + strand at 389.140 kb on + strand at 389.140 kb on + strand at 389.140 kb on + strand at 389.141 kb on - strand at 389.141 kb on - strand at 389.141 kb on - strand at 389.433 kb on - strand, within AMB_RS01805 at 389.433 kb on - strand, within AMB_RS01805 at 389.557 kb on + strand, within AMB_RS01805 at 389.557 kb on + strand, within AMB_RS01805 at 389.558 kb on - strand, within AMB_RS01805 at 389.558 kb on - strand, within AMB_RS01805 at 389.590 kb on + strand, within AMB_RS01805 at 389.590 kb on + strand, within AMB_RS01805 at 389.590 kb on + strand, within AMB_RS01805 at 389.590 kb on + strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.591 kb on - strand, within AMB_RS01805 at 389.624 kb on - strand, within AMB_RS01805 at 389.624 kb on - strand, within AMB_RS01805 at 389.908 kb on + strand, within AMB_RS01805 at 389.908 kb on + strand, within AMB_RS01805 at 389.909 kb on - strand, within AMB_RS01805 at 389.909 kb on - strand, within AMB_RS01805 at 389.909 kb on - strand, within AMB_RS01805 at 389.909 kb on - strand, within AMB_RS01805 at 389.909 kb on - strand, within AMB_RS01805 at 390.055 kb on - strand at 390.055 kb on - strand at 390.061 kb on - strand at 390.216 kb on + strand, within AMB_RS01810 at 390.216 kb on + strand, within AMB_RS01810 at 390.217 kb on - strand, within AMB_RS01810 at 390.217 kb on - strand, within AMB_RS01810 at 390.217 kb on - strand, within AMB_RS01810 at 390.217 kb on - strand, within AMB_RS01810 at 390.261 kb on + strand, within AMB_RS01810 at 390.261 kb on + strand, within AMB_RS01810 at 390.262 kb on - strand, within AMB_RS01810 at 390.262 kb on - strand, within AMB_RS01810 at 390.262 kb on - strand, within AMB_RS01810 at 390.339 kb on + strand, within AMB_RS01810 at 390.339 kb on + strand, within AMB_RS01810 at 390.339 kb on + strand, within AMB_RS01810 at 390.340 kb on - strand, within AMB_RS01810 at 390.340 kb on - strand, within AMB_RS01810 at 390.340 kb on - strand, within AMB_RS01810 at 390.340 kb on - strand, within AMB_RS01810 at 390.340 kb on - strand, within AMB_RS01810 at 390.412 kb on - strand, within AMB_RS01810 at 390.470 kb on + strand, within AMB_RS01810 at 390.730 kb on - strand, within AMB_RS01810 at 390.830 kb on + strand, within AMB_RS01810 at 390.831 kb on - strand, within AMB_RS01810 at 390.831 kb on - strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 391.099 kb on + strand, within AMB_RS01810 at 391.167 kb on - strand, within AMB_RS01810 at 391.167 kb on - strand, within AMB_RS01810 at 391.309 kb on - strand, within AMB_RS01810 at 391.344 kb on - strand, within AMB_RS01810 at 391.357 kb on - strand, within AMB_RS01810 at 391.411 kb on - strand, within AMB_RS01810 at 391.411 kb on - strand, within AMB_RS01810 at 391.622 kb on - strand, within AMB_RS01815 at 391.773 kb on - strand, within AMB_RS01815 at 391.857 kb on - strand, within AMB_RS01815 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.448 kb on - strand, within AMB_RS01820
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 389,015 + AMB_RS01800 0.80 -0.2 389,016 - AMB_RS01800 0.80 +0.6 389,085 + +0.4 389,085 + -0.7 389,086 - +0.3 389,086 - -0.3 389,086 - -0.3 389,110 - -0.7 389,131 + +0.0 389,132 - -0.7 389,132 - -0.5 389,132 - -1.9 389,140 + -0.5 389,140 + -1.1 389,140 + -0.3 389,140 + -1.6 389,141 - +1.0 389,141 - +0.3 389,141 - +0.8 389,433 - AMB_RS01805 0.37 +0.0 389,433 - AMB_RS01805 0.37 -2.8 389,557 + AMB_RS01805 0.51 +0.3 389,557 + AMB_RS01805 0.51 -0.7 389,558 - AMB_RS01805 0.51 -0.3 389,558 - AMB_RS01805 0.51 -0.2 389,590 + AMB_RS01805 0.54 -0.1 389,590 + AMB_RS01805 0.54 -0.8 389,590 + AMB_RS01805 0.54 +1.1 389,590 + AMB_RS01805 0.54 -0.6 389,591 - AMB_RS01805 0.54 +0.2 389,591 - AMB_RS01805 0.54 +0.0 389,591 - AMB_RS01805 0.54 -1.7 389,591 - AMB_RS01805 0.54 +0.3 389,591 - AMB_RS01805 0.54 -0.3 389,591 - AMB_RS01805 0.54 -1.0 389,591 - AMB_RS01805 0.54 -0.1 389,591 - AMB_RS01805 0.54 -1.2 389,591 - AMB_RS01805 0.54 -0.2 389,591 - AMB_RS01805 0.54 -0.5 389,591 - AMB_RS01805 0.54 +0.2 389,624 - AMB_RS01805 0.58 +1.0 389,624 - AMB_RS01805 0.58 -0.3 389,908 + AMB_RS01805 0.88 -0.9 389,908 + AMB_RS01805 0.88 +1.1 389,909 - AMB_RS01805 0.88 +0.1 389,909 - AMB_RS01805 0.88 +0.0 389,909 - AMB_RS01805 0.88 +0.7 389,909 - AMB_RS01805 0.88 +0.9 389,909 - AMB_RS01805 0.88 -2.2 390,055 - -0.4 390,055 - -0.7 390,061 - -0.5 390,216 + AMB_RS01810 0.13 +1.3 390,216 + AMB_RS01810 0.13 -0.3 390,217 - AMB_RS01810 0.13 -0.5 390,217 - AMB_RS01810 0.13 +0.1 390,217 - AMB_RS01810 0.13 -0.9 390,217 - AMB_RS01810 0.13 -1.7 390,261 + AMB_RS01810 0.16 +0.8 390,261 + AMB_RS01810 0.16 -0.6 390,262 - AMB_RS01810 0.16 -0.1 390,262 - AMB_RS01810 0.16 -1.4 390,262 - AMB_RS01810 0.16 +0.7 390,339 + AMB_RS01810 0.21 +1.2 390,339 + AMB_RS01810 0.21 +0.5 390,339 + AMB_RS01810 0.21 -0.9 390,340 - AMB_RS01810 0.21 +1.6 390,340 - AMB_RS01810 0.21 -0.4 390,340 - AMB_RS01810 0.21 +0.2 390,340 - AMB_RS01810 0.21 -0.5 390,340 - AMB_RS01810 0.21 +0.6 390,412 - AMB_RS01810 0.26 -0.2 390,470 + AMB_RS01810 0.29 -0.1 390,730 - AMB_RS01810 0.46 -1.7 390,830 + AMB_RS01810 0.52 -2.0 390,831 - AMB_RS01810 0.52 -0.5 390,831 - AMB_RS01810 0.52 -0.2 390,993 + AMB_RS01810 0.63 -1.7 390,993 + AMB_RS01810 0.63 -2.5 390,993 + AMB_RS01810 0.63 -0.4 390,993 + AMB_RS01810 0.63 +0.2 390,994 - AMB_RS01810 0.63 -0.5 390,994 - AMB_RS01810 0.63 +0.0 390,994 - AMB_RS01810 0.63 -0.1 391,099 + AMB_RS01810 0.69 -0.2 391,167 - AMB_RS01810 0.74 -1.4 391,167 - AMB_RS01810 0.74 -2.0 391,309 - AMB_RS01810 0.83 -0.0 391,344 - AMB_RS01810 0.85 +0.3 391,357 - AMB_RS01810 0.86 -0.1 391,411 - AMB_RS01810 0.89 -0.2 391,411 - AMB_RS01810 0.89 -1.6 391,622 - AMB_RS01815 0.13 +1.6 391,773 - AMB_RS01815 0.55 -2.1 391,857 - AMB_RS01815 0.78 +0.4 392,395 + AMB_RS01820 0.20 +0.2 392,395 + AMB_RS01820 0.20 +0.6 392,395 + AMB_RS01820 0.20 -0.2 392,395 + AMB_RS01820 0.20 -1.0 392,395 + AMB_RS01820 0.20 +1.0 392,395 + AMB_RS01820 0.20 -1.6 392,395 + AMB_RS01820 0.20 -0.2 392,396 - AMB_RS01820 0.20 -0.5 392,396 - AMB_RS01820 0.20 -0.5 392,396 - AMB_RS01820 0.20 -0.3 392,396 - AMB_RS01820 0.20 -0.4 392,396 - AMB_RS01820 0.20 +0.1 392,396 - AMB_RS01820 0.20 -0.3 392,448 - AMB_RS01820 0.23 -1.3
Or see this region's nucleotide sequence