Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01465

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01455 and AMB_RS01460 are separated by 178 nucleotidesAMB_RS01460 and AMB_RS01465 are separated by 107 nucleotidesAMB_RS01465 and AMB_RS01470 are separated by 12 nucleotides AMB_RS01455: AMB_RS01455 - DNA mismatch repair protein MutS, at 319,224 to 321,830 _RS01455 AMB_RS01460: AMB_RS01460 - hypothetical protein, at 322,009 to 322,536 _RS01460 AMB_RS01465: AMB_RS01465 - NADP-dependent malic enzyme, at 322,644 to 324,944 _RS01465 AMB_RS01470: AMB_RS01470 - two-component sensor histidine kinase, at 324,957 to 326,366 _RS01470 Position (kb) 322 323 324 325Strain fitness (log2 ratio) -2 -1 0 1at 321.757 kb on + strandat 321.758 kb on - strandat 321.776 kb on - strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.818 kb on - strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.893 kb on - strandat 321.913 kb on + strandat 321.913 kb on + strandat 321.914 kb on - strandat 322.024 kb on - strandat 322.059 kb on + strandat 322.059 kb on + strandat 322.060 kb on - strandat 322.060 kb on - strandat 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.464 kb on - strand, within AMB_RS01460at 322.700 kb on + strandat 322.700 kb on + strandat 322.701 kb on - strandat 322.701 kb on - strandat 322.806 kb on + strandat 322.807 kb on - strandat 322.864 kb on - strandat 322.869 kb on + strandat 322.870 kb on - strandat 322.870 kb on - strandat 322.870 kb on - strandat 323.064 kb on + strand, within AMB_RS01465at 323.064 kb on + strand, within AMB_RS01465at 323.065 kb on - strand, within AMB_RS01465at 323.065 kb on - strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.323 kb on + strand, within AMB_RS01465at 323.324 kb on - strand, within AMB_RS01465at 323.324 kb on - strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.367 kb on + strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.368 kb on - strand, within AMB_RS01465at 323.469 kb on + strand, within AMB_RS01465at 323.469 kb on + strand, within AMB_RS01465at 323.470 kb on - strand, within AMB_RS01465at 323.470 kb on - strand, within AMB_RS01465at 323.629 kb on - strand, within AMB_RS01465at 323.629 kb on - strand, within AMB_RS01465at 323.664 kb on + strand, within AMB_RS01465at 323.664 kb on + strand, within AMB_RS01465at 323.664 kb on + strand, within AMB_RS01465at 323.665 kb on - strand, within AMB_RS01465at 323.665 kb on - strand, within AMB_RS01465at 323.787 kb on + strand, within AMB_RS01465at 323.787 kb on + strand, within AMB_RS01465at 323.787 kb on + strand, within AMB_RS01465at 323.820 kb on + strand, within AMB_RS01465at 323.820 kb on + strand, within AMB_RS01465at 323.820 kb on + strand, within AMB_RS01465at 323.821 kb on - strand, within AMB_RS01465at 323.821 kb on - strand, within AMB_RS01465at 323.821 kb on - strand, within AMB_RS01465at 323.821 kb on - strand, within AMB_RS01465at 323.821 kb on - strand, within AMB_RS01465at 323.934 kb on + strand, within AMB_RS01465at 323.935 kb on - strand, within AMB_RS01465at 323.935 kb on - strand, within AMB_RS01465at 323.935 kb on - strand, within AMB_RS01465at 324.143 kb on + strand, within AMB_RS01465at 324.210 kb on + strand, within AMB_RS01465at 324.210 kb on + strand, within AMB_RS01465at 324.211 kb on - strand, within AMB_RS01465at 324.211 kb on - strand, within AMB_RS01465at 324.212 kb on + strand, within AMB_RS01465at 324.225 kb on + strand, within AMB_RS01465at 324.225 kb on + strand, within AMB_RS01465at 324.225 kb on + strand, within AMB_RS01465at 324.225 kb on + strand, within AMB_RS01465at 324.225 kb on + strand, within AMB_RS01465at 324.226 kb on - strand, within AMB_RS01465at 324.226 kb on - strand, within AMB_RS01465at 324.226 kb on - strand, within AMB_RS01465at 324.226 kb on - strand, within AMB_RS01465at 324.361 kb on - strand, within AMB_RS01465at 324.361 kb on - strand, within AMB_RS01465at 324.434 kb on - strand, within AMB_RS01465at 324.434 kb on - strand, within AMB_RS01465at 324.434 kb on - strand, within AMB_RS01465at 324.579 kb on + strand, within AMB_RS01465at 324.580 kb on - strand, within AMB_RS01465at 324.669 kb on + strand, within AMB_RS01465at 324.670 kb on - strand, within AMB_RS01465at 324.778 kb on - strandat 324.927 kb on + strandat 324.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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321,757 + +0.6
321,758 - +0.3
321,776 - +0.7
321,817 + -0.6
321,817 + -1.0
321,817 + -0.9
321,817 + -0.7
321,818 - -1.1
321,881 + +0.7
321,881 + +0.5
321,881 + -0.9
321,893 - -1.1
321,913 + +0.2
321,913 + +0.1
321,914 - +0.2
322,024 - +0.8
322,059 + +0.1
322,059 + -0.1
322,060 - -0.8
322,060 - -0.1
322,240 + AMB_RS01460 0.44 -0.6
322,240 + AMB_RS01460 0.44 -0.7
322,240 + AMB_RS01460 0.44 -0.3
322,240 + AMB_RS01460 0.44 -0.3
322,240 + AMB_RS01460 0.44 +0.5
322,241 - AMB_RS01460 0.44 -0.4
322,241 - AMB_RS01460 0.44 +0.0
322,241 - AMB_RS01460 0.44 -0.0
322,463 + AMB_RS01460 0.86 +1.4
322,463 + AMB_RS01460 0.86 +0.1
322,464 - AMB_RS01460 0.86 -0.3
322,700 + -0.8
322,700 + -1.0
322,701 - +0.0
322,701 - -0.3
322,806 + -0.6
322,807 - -0.8
322,864 - -0.3
322,869 + +0.0
322,870 - -0.1
322,870 - -0.4
322,870 - +0.1
323,064 + AMB_RS01465 0.18 -0.3
323,064 + AMB_RS01465 0.18 -1.0
323,065 - AMB_RS01465 0.18 -0.5
323,065 - AMB_RS01465 0.18 +0.4
323,323 + AMB_RS01465 0.30 +0.2
323,323 + AMB_RS01465 0.30 -0.2
323,323 + AMB_RS01465 0.30 -0.3
323,324 - AMB_RS01465 0.30 -1.0
323,324 - AMB_RS01465 0.30 -0.5
323,367 + AMB_RS01465 0.31 -0.3
323,367 + AMB_RS01465 0.31 -0.1
323,367 + AMB_RS01465 0.31 -0.2
323,368 - AMB_RS01465 0.31 -0.9
323,368 - AMB_RS01465 0.31 -2.7
323,368 - AMB_RS01465 0.31 -0.3
323,368 - AMB_RS01465 0.31 +0.3
323,368 - AMB_RS01465 0.31 +0.3
323,368 - AMB_RS01465 0.31 -0.4
323,469 + AMB_RS01465 0.36 +0.6
323,469 + AMB_RS01465 0.36 -0.6
323,470 - AMB_RS01465 0.36 -0.6
323,470 - AMB_RS01465 0.36 -0.4
323,629 - AMB_RS01465 0.43 +0.6
323,629 - AMB_RS01465 0.43 -0.1
323,664 + AMB_RS01465 0.44 -0.5
323,664 + AMB_RS01465 0.44 -0.8
323,664 + AMB_RS01465 0.44 +0.5
323,665 - AMB_RS01465 0.44 -0.5
323,665 - AMB_RS01465 0.44 -0.6
323,787 + AMB_RS01465 0.50 -0.0
323,787 + AMB_RS01465 0.50 -1.9
323,787 + AMB_RS01465 0.50 +0.9
323,820 + AMB_RS01465 0.51 -0.5
323,820 + AMB_RS01465 0.51 -0.4
323,820 + AMB_RS01465 0.51 -0.2
323,821 - AMB_RS01465 0.51 -0.2
323,821 - AMB_RS01465 0.51 -1.1
323,821 - AMB_RS01465 0.51 +1.3
323,821 - AMB_RS01465 0.51 +0.3
323,821 - AMB_RS01465 0.51 +0.0
323,934 + AMB_RS01465 0.56 -0.1
323,935 - AMB_RS01465 0.56 -0.2
323,935 - AMB_RS01465 0.56 -0.5
323,935 - AMB_RS01465 0.56 +0.3
324,143 + AMB_RS01465 0.65 -0.2
324,210 + AMB_RS01465 0.68 +0.8
324,210 + AMB_RS01465 0.68 +0.0
324,211 - AMB_RS01465 0.68 -0.8
324,211 - AMB_RS01465 0.68 +0.3
324,212 + AMB_RS01465 0.68 +1.0
324,225 + AMB_RS01465 0.69 -0.2
324,225 + AMB_RS01465 0.69 -0.4
324,225 + AMB_RS01465 0.69 +1.2
324,225 + AMB_RS01465 0.69 -0.0
324,225 + AMB_RS01465 0.69 -0.3
324,226 - AMB_RS01465 0.69 +0.5
324,226 - AMB_RS01465 0.69 -0.4
324,226 - AMB_RS01465 0.69 -0.3
324,226 - AMB_RS01465 0.69 +0.9
324,361 - AMB_RS01465 0.75 +0.3
324,361 - AMB_RS01465 0.75 +0.0
324,434 - AMB_RS01465 0.78 -0.3
324,434 - AMB_RS01465 0.78 -0.2
324,434 - AMB_RS01465 0.78 +1.2
324,579 + AMB_RS01465 0.84 -1.2
324,580 - AMB_RS01465 0.84 -1.7
324,669 + AMB_RS01465 0.88 -1.2
324,670 - AMB_RS01465 0.88 +0.3
324,778 - -0.7
324,927 + -0.7
324,928 - -0.8

Or see this region's nucleotide sequence