Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01320

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01315 and AMB_RS01320 are separated by 118 nucleotidesAMB_RS01320 and AMB_RS01325 are separated by 36 nucleotidesAMB_RS01325 and AMB_RS01330 overlap by 4 nucleotides AMB_RS01315: AMB_RS01315 - 4-hydroxybenzoate 3-monooxygenase, at 289,414 to 290,589 _RS01315 AMB_RS01320: AMB_RS01320 - MFS transporter, at 290,708 to 292,105 _RS01320 AMB_RS01325: AMB_RS01325 - phosphatase PAP2 family protein, at 292,142 to 292,930 _RS01325 AMB_RS01330: AMB_RS01330 - glycosyltransferase family 39 protein, at 292,927 to 294,570 _RS01330 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.712 kb on - strand, within AMB_RS01315at 289.712 kb on - strand, within AMB_RS01315at 289.777 kb on + strand, within AMB_RS01315at 289.778 kb on - strand, within AMB_RS01315at 289.834 kb on + strand, within AMB_RS01315at 289.835 kb on - strand, within AMB_RS01315at 289.835 kb on - strand, within AMB_RS01315at 289.895 kb on - strand, within AMB_RS01315at 289.954 kb on + strand, within AMB_RS01315at 289.954 kb on + strand, within AMB_RS01315at 289.955 kb on - strand, within AMB_RS01315at 289.955 kb on - strand, within AMB_RS01315at 289.955 kb on - strand, within AMB_RS01315at 290.014 kb on + strand, within AMB_RS01315at 290.014 kb on + strand, within AMB_RS01315at 290.014 kb on + strand, within AMB_RS01315at 290.015 kb on - strand, within AMB_RS01315at 290.015 kb on - strand, within AMB_RS01315at 290.075 kb on - strand, within AMB_RS01315at 290.075 kb on - strand, within AMB_RS01315at 290.075 kb on - strand, within AMB_RS01315at 290.077 kb on + strand, within AMB_RS01315at 290.077 kb on + strand, within AMB_RS01315at 290.077 kb on + strand, within AMB_RS01315at 290.077 kb on + strand, within AMB_RS01315at 290.077 kb on + strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.078 kb on - strand, within AMB_RS01315at 290.362 kb on + strand, within AMB_RS01315at 290.362 kb on + strand, within AMB_RS01315at 290.518 kb on + strandat 290.519 kb on - strandat 290.519 kb on - strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.563 kb on + strandat 290.564 kb on - strandat 290.564 kb on - strandat 290.564 kb on - strandat 290.564 kb on - strandat 290.564 kb on - strandat 290.564 kb on - strandat 290.603 kb on + strandat 290.687 kb on + strandat 290.688 kb on - strandat 290.688 kb on - strandat 290.768 kb on + strandat 290.840 kb on + strandat 290.840 kb on + strandat 290.840 kb on + strandat 290.841 kb on - strandat 290.841 kb on - strandat 290.841 kb on - strandat 290.843 kb on - strandat 290.843 kb on - strandat 290.843 kb on - strandat 291.125 kb on + strand, within AMB_RS01320at 291.126 kb on - strand, within AMB_RS01320at 291.126 kb on - strand, within AMB_RS01320at 291.320 kb on + strand, within AMB_RS01320at 291.321 kb on - strand, within AMB_RS01320at 291.321 kb on - strand, within AMB_RS01320at 291.479 kb on + strand, within AMB_RS01320at 291.479 kb on + strand, within AMB_RS01320at 291.479 kb on + strand, within AMB_RS01320at 291.479 kb on + strand, within AMB_RS01320at 291.479 kb on + strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.480 kb on - strand, within AMB_RS01320at 291.512 kb on + strand, within AMB_RS01320at 291.512 kb on + strand, within AMB_RS01320at 291.513 kb on - strand, within AMB_RS01320at 291.513 kb on - strand, within AMB_RS01320at 291.513 kb on - strand, within AMB_RS01320at 291.537 kb on - strand, within AMB_RS01320at 291.537 kb on - strand, within AMB_RS01320at 291.537 kb on - strand, within AMB_RS01320at 291.698 kb on + strand, within AMB_RS01320at 291.698 kb on + strand, within AMB_RS01320at 291.698 kb on + strand, within AMB_RS01320at 291.699 kb on - strand, within AMB_RS01320at 291.699 kb on - strand, within AMB_RS01320at 291.699 kb on - strand, within AMB_RS01320at 291.836 kb on + strand, within AMB_RS01320at 291.836 kb on + strand, within AMB_RS01320at 291.837 kb on - strand, within AMB_RS01320at 292.144 kb on - strandat 292.335 kb on + strand, within AMB_RS01325at 292.416 kb on + strand, within AMB_RS01325at 292.416 kb on + strand, within AMB_RS01325at 292.417 kb on - strand, within AMB_RS01325at 292.444 kb on - strand, within AMB_RS01325at 292.444 kb on - strand, within AMB_RS01325at 292.632 kb on - strand, within AMB_RS01325at 292.632 kb on - strand, within AMB_RS01325at 292.782 kb on + strand, within AMB_RS01325at 292.783 kb on - strand, within AMB_RS01325at 292.952 kb on + strandat 292.985 kb on + strandat 292.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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289,712 - AMB_RS01315 0.25 +0.1
289,712 - AMB_RS01315 0.25 -0.8
289,777 + AMB_RS01315 0.31 -0.1
289,778 - AMB_RS01315 0.31 -0.8
289,834 + AMB_RS01315 0.36 -2.4
289,835 - AMB_RS01315 0.36 -1.2
289,835 - AMB_RS01315 0.36 -0.4
289,895 - AMB_RS01315 0.41 -0.0
289,954 + AMB_RS01315 0.46 -0.1
289,954 + AMB_RS01315 0.46 -1.1
289,955 - AMB_RS01315 0.46 +0.9
289,955 - AMB_RS01315 0.46 -1.6
289,955 - AMB_RS01315 0.46 -0.6
290,014 + AMB_RS01315 0.51 -0.1
290,014 + AMB_RS01315 0.51 +0.0
290,014 + AMB_RS01315 0.51 +0.4
290,015 - AMB_RS01315 0.51 -0.1
290,015 - AMB_RS01315 0.51 +0.5
290,075 - AMB_RS01315 0.56 -2.4
290,075 - AMB_RS01315 0.56 -0.1
290,075 - AMB_RS01315 0.56 -0.6
290,077 + AMB_RS01315 0.56 -0.5
290,077 + AMB_RS01315 0.56 +0.2
290,077 + AMB_RS01315 0.56 +0.7
290,077 + AMB_RS01315 0.56 -1.1
290,077 + AMB_RS01315 0.56 -0.3
290,078 - AMB_RS01315 0.56 -0.4
290,078 - AMB_RS01315 0.56 -0.6
290,078 - AMB_RS01315 0.56 -0.4
290,078 - AMB_RS01315 0.56 -0.2
290,078 - AMB_RS01315 0.56 -0.0
290,078 - AMB_RS01315 0.56 +0.4
290,362 + AMB_RS01315 0.81 -0.4
290,362 + AMB_RS01315 0.81 -0.7
290,518 + -0.1
290,519 - -2.3
290,519 - +0.4
290,563 + -1.5
290,563 + -0.1
290,563 + -0.4
290,563 + +1.9
290,563 + -0.2
290,563 + -0.2
290,563 + -0.6
290,563 + +0.1
290,563 + +0.3
290,564 - -0.3
290,564 - -0.1
290,564 - -0.4
290,564 - +0.8
290,564 - -0.7
290,564 - +0.4
290,603 + -0.4
290,687 + -0.3
290,688 - +1.5
290,688 - -1.1
290,768 + -0.6
290,840 + -0.5
290,840 + -0.9
290,840 + -0.1
290,841 - +0.1
290,841 - -0.7
290,841 - +0.1
290,843 - -0.2
290,843 - +1.8
290,843 - -1.0
291,125 + AMB_RS01320 0.30 -0.6
291,126 - AMB_RS01320 0.30 -0.5
291,126 - AMB_RS01320 0.30 -0.1
291,320 + AMB_RS01320 0.44 -0.3
291,321 - AMB_RS01320 0.44 -0.7
291,321 - AMB_RS01320 0.44 -0.0
291,479 + AMB_RS01320 0.55 -2.1
291,479 + AMB_RS01320 0.55 -0.6
291,479 + AMB_RS01320 0.55 -0.8
291,479 + AMB_RS01320 0.55 -3.0
291,479 + AMB_RS01320 0.55 -0.1
291,480 - AMB_RS01320 0.55 -0.2
291,480 - AMB_RS01320 0.55 -0.2
291,480 - AMB_RS01320 0.55 -1.4
291,480 - AMB_RS01320 0.55 +0.3
291,480 - AMB_RS01320 0.55 -0.1
291,480 - AMB_RS01320 0.55 +0.4
291,512 + AMB_RS01320 0.58 -0.1
291,512 + AMB_RS01320 0.58 -0.1
291,513 - AMB_RS01320 0.58 +0.4
291,513 - AMB_RS01320 0.58 +0.8
291,513 - AMB_RS01320 0.58 -0.7
291,537 - AMB_RS01320 0.59 -3.0
291,537 - AMB_RS01320 0.59 +0.1
291,537 - AMB_RS01320 0.59 -0.4
291,698 + AMB_RS01320 0.71 -0.8
291,698 + AMB_RS01320 0.71 -1.0
291,698 + AMB_RS01320 0.71 +1.0
291,699 - AMB_RS01320 0.71 -0.5
291,699 - AMB_RS01320 0.71 -0.2
291,699 - AMB_RS01320 0.71 +0.1
291,836 + AMB_RS01320 0.81 +0.4
291,836 + AMB_RS01320 0.81 -1.2
291,837 - AMB_RS01320 0.81 -0.5
292,144 - -1.8
292,335 + AMB_RS01325 0.24 +0.4
292,416 + AMB_RS01325 0.35 +0.1
292,416 + AMB_RS01325 0.35 +0.4
292,417 - AMB_RS01325 0.35 -1.1
292,444 - AMB_RS01325 0.38 +0.4
292,444 - AMB_RS01325 0.38 -1.6
292,632 - AMB_RS01325 0.62 -0.5
292,632 - AMB_RS01325 0.62 -0.2
292,782 + AMB_RS01325 0.81 -0.0
292,783 - AMB_RS01325 0.81 +0.1
292,952 + -0.6
292,985 + -0.6
292,985 + +1.0

Or see this region's nucleotide sequence