Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00910

Experiment: 30_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00900 and AMB_RS00905 overlap by 4 nucleotidesAMB_RS00905 and AMB_RS00910 are separated by 52 nucleotidesAMB_RS00910 and AMB_RS00915 overlap by 4 nucleotides AMB_RS00900: AMB_RS00900 - acyl-CoA thioesterase, at 203,931 to 204,407 _RS00900 AMB_RS00905: AMB_RS00905 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 204,404 to 205,189 _RS00905 AMB_RS00910: AMB_RS00910 - indolepyruvate ferredoxin subunit alpha, at 205,242 to 207,341 _RS00910 AMB_RS00915: AMB_RS00915 - indolepyruvate oxidoreductase subunit B, at 207,338 to 208,846 _RS00915 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 204.375 kb on + strandat 204.375 kb on + strandat 204.375 kb on + strandat 204.376 kb on - strandat 204.376 kb on - strandat 204.662 kb on + strand, within AMB_RS00905at 204.662 kb on + strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.664 kb on + strand, within AMB_RS00905at 205.066 kb on + strand, within AMB_RS00905at 205.131 kb on - strandat 205.211 kb on + strandat 205.212 kb on - strandat 205.212 kb on - strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.372 kb on - strandat 205.629 kb on + strand, within AMB_RS00910at 205.629 kb on + strand, within AMB_RS00910at 205.630 kb on - strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.112 kb on + strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.211 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.754 kb on + strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.883 kb on + strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 207.052 kb on - strand, within AMB_RS00910at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.125 kb on - strand, within AMB_RS00915at 208.136 kb on + strand, within AMB_RS00915

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
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204,375 + -0.3
204,375 + -1.4
204,375 + +0.1
204,376 - -0.3
204,376 - -0.7
204,662 + AMB_RS00905 0.33 +0.8
204,662 + AMB_RS00905 0.33 +1.2
204,663 - AMB_RS00905 0.33 -0.4
204,663 - AMB_RS00905 0.33 -0.5
204,664 + AMB_RS00905 0.33 +0.0
205,066 + AMB_RS00905 0.84 +1.6
205,131 - -0.1
205,211 + -1.1
205,212 - -0.4
205,212 - +1.0
205,359 + -0.0
205,359 + +0.2
205,359 + -0.1
205,359 + -0.2
205,359 + -1.1
205,359 + -0.7
205,359 + -0.9
205,359 + +0.4
205,359 + -1.1
205,359 + -0.7
205,360 - -1.0
205,360 - -0.3
205,360 - -1.3
205,360 - -0.0
205,360 - -4.2
205,360 - -1.3
205,360 - -1.2
205,360 - -0.4
205,360 - -0.8
205,372 - -0.3
205,629 + AMB_RS00910 0.18 +0.1
205,629 + AMB_RS00910 0.18 -0.6
205,630 - AMB_RS00910 0.18 +0.0
205,733 + AMB_RS00910 0.23 -0.8
205,733 + AMB_RS00910 0.23 -0.4
205,734 - AMB_RS00910 0.23 +0.9
205,734 - AMB_RS00910 0.23 -0.5
205,734 - AMB_RS00910 0.23 +0.5
205,734 - AMB_RS00910 0.23 -0.3
205,734 - AMB_RS00910 0.23 -0.7
205,734 - AMB_RS00910 0.23 -0.8
205,734 - AMB_RS00910 0.23 +0.1
206,040 + AMB_RS00910 0.38 -0.7
206,040 + AMB_RS00910 0.38 -1.4
206,040 + AMB_RS00910 0.38 -0.8
206,040 + AMB_RS00910 0.38 -0.6
206,041 - AMB_RS00910 0.38 -0.9
206,041 - AMB_RS00910 0.38 -1.0
206,041 - AMB_RS00910 0.38 -1.6
206,112 + AMB_RS00910 0.41 -1.1
206,113 - AMB_RS00910 0.41 -0.7
206,113 - AMB_RS00910 0.41 +0.8
206,113 - AMB_RS00910 0.41 -0.1
206,113 - AMB_RS00910 0.41 -0.6
206,211 + AMB_RS00910 0.46 -0.6
206,301 + AMB_RS00910 0.50 -0.7
206,301 + AMB_RS00910 0.50 -1.1
206,301 + AMB_RS00910 0.50 -2.3
206,302 - AMB_RS00910 0.50 +0.5
206,302 - AMB_RS00910 0.50 -1.4
206,302 - AMB_RS00910 0.50 -0.4
206,302 - AMB_RS00910 0.50 -0.3
206,302 - AMB_RS00910 0.50 -0.0
206,302 - AMB_RS00910 0.50 -1.4
206,302 - AMB_RS00910 0.50 -0.7
206,302 - AMB_RS00910 0.50 -0.8
206,754 + AMB_RS00910 0.72 +1.3
206,755 - AMB_RS00910 0.72 -1.3
206,755 - AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 -0.8
206,756 + AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 +0.7
206,756 + AMB_RS00910 0.72 -0.7
206,757 - AMB_RS00910 0.72 -0.9
206,757 - AMB_RS00910 0.72 -0.2
206,757 - AMB_RS00910 0.72 -2.8
206,778 + AMB_RS00910 0.73 -0.2
206,778 + AMB_RS00910 0.73 -0.7
206,778 + AMB_RS00910 0.73 -1.6
206,778 + AMB_RS00910 0.73 -1.0
206,778 + AMB_RS00910 0.73 +0.4
206,778 + AMB_RS00910 0.73 -1.0
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 -0.8
206,778 + AMB_RS00910 0.73 -0.4
206,778 + AMB_RS00910 0.73 -2.4
206,778 + AMB_RS00910 0.73 -1.3
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -2.4
206,778 + AMB_RS00910 0.73 -0.3
206,778 + AMB_RS00910 0.73 -0.4
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -0.7
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 +0.7
206,778 + AMB_RS00910 0.73 -1.4
206,778 + AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -1.2
206,779 - AMB_RS00910 0.73 +0.3
206,779 - AMB_RS00910 0.73 +0.4
206,779 - AMB_RS00910 0.73 +0.4
206,779 - AMB_RS00910 0.73 -1.6
206,779 - AMB_RS00910 0.73 -1.4
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -0.0
206,779 - AMB_RS00910 0.73 -1.6
206,779 - AMB_RS00910 0.73 -2.4
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 -0.2
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 -0.3
206,779 - AMB_RS00910 0.73 +0.3
206,779 - AMB_RS00910 0.73 -0.6
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -1.0
206,883 + AMB_RS00910 0.78 -0.6
206,884 - AMB_RS00910 0.78 -1.2
206,884 - AMB_RS00910 0.78 -0.9
207,052 - AMB_RS00910 0.86 +0.2
207,493 + AMB_RS00915 0.10 +0.7
207,493 + AMB_RS00915 0.10 -0.3
207,493 + AMB_RS00915 0.10 -1.4
207,494 - AMB_RS00915 0.10 -1.5
207,494 - AMB_RS00915 0.10 -0.8
207,494 - AMB_RS00915 0.10 -0.4
207,494 - AMB_RS00915 0.10 -1.2
207,494 - AMB_RS00915 0.10 -0.6
207,497 + AMB_RS00915 0.11 -0.8
207,497 + AMB_RS00915 0.11 -0.4
207,497 + AMB_RS00915 0.11 -0.9
207,497 + AMB_RS00915 0.11 -0.7
207,497 + AMB_RS00915 0.11 -0.5
207,497 + AMB_RS00915 0.11 -0.6
207,498 - AMB_RS00915 0.11 -0.5
207,498 - AMB_RS00915 0.11 -1.7
207,498 - AMB_RS00915 0.11 -0.9
207,498 - AMB_RS00915 0.11 +0.0
207,498 - AMB_RS00915 0.11 -0.8
207,498 - AMB_RS00915 0.11 -0.2
207,498 - AMB_RS00915 0.11 -0.7
207,498 - AMB_RS00915 0.11 -3.5
207,498 - AMB_RS00915 0.11 -1.6
207,498 - AMB_RS00915 0.11 +0.0
207,498 - AMB_RS00915 0.11 -2.1
207,498 - AMB_RS00915 0.11 +0.7
207,498 - AMB_RS00915 0.11 -0.5
207,498 - AMB_RS00915 0.11 -0.2
207,500 + AMB_RS00915 0.11 -2.4
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -0.7
207,500 + AMB_RS00915 0.11 -0.6
207,500 + AMB_RS00915 0.11 +0.1
207,501 - AMB_RS00915 0.11 -0.8
207,501 - AMB_RS00915 0.11 -0.5
208,109 + AMB_RS00915 0.51 +0.4
208,109 + AMB_RS00915 0.51 -0.0
208,125 - AMB_RS00915 0.52 -1.0
208,136 + AMB_RS00915 0.53 -0.6

Or see this region's nucleotide sequence