Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00560

Experiment: 30_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00550 and AMB_RS00555 overlap by 4 nucleotidesAMB_RS00555 and AMB_RS00560 are separated by 8 nucleotidesAMB_RS00560 and AMB_RS00565 are separated by 121 nucleotides AMB_RS00550: AMB_RS00550 - DUF751 domain-containing protein, at 125,307 to 127,205 _RS00550 AMB_RS00555: AMB_RS00555 - glycosyltransferase, at 127,202 to 128,143 _RS00555 AMB_RS00560: AMB_RS00560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 128,152 to 129,339 _RS00560 AMB_RS00565: AMB_RS00565 - acyltransferase, at 129,461 to 130,039 _RS00565 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1at 128.154 kb on - strandat 130.226 kb on + strandat 130.227 kb on - strandat 130.280 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_1
remove
128,154 - -0.7
130,226 + -0.3
130,227 - -0.1
130,280 + -0.6

Or see this region's nucleotide sequence