Experiment: 30_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00085 and AMB_RS00090 are separated by 7 nucleotides AMB_RS00090 and AMB_RS00095 are separated by 70 nucleotides
AMB_RS00085: AMB_RS00085 - aspartate aminotransferase, at 13,864 to 15,063
_RS00085
AMB_RS00090: AMB_RS00090 - DNA translocase FtsK, at 15,071 to 17,485
_RS00090
AMB_RS00095: AMB_RS00095 - outer membrane lipoprotein carrier protein LolA, at 17,556 to 18,212
_RS00095
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -1
0
1 at 14.188 kb on + strand, within AMB_RS00085 at 14.779 kb on + strand, within AMB_RS00085 at 17.480 kb on + strand at 17.480 kb on + strand at 17.481 kb on - strand at 18.364 kb on + strand at 18.406 kb on + strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.411 kb on - strand at 18.411 kb on - strand at 18.465 kb on + strand at 18.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_1 remove 14,188 + AMB_RS00085 0.27 -0.1 14,779 + AMB_RS00085 0.76 +0.2 17,480 + -0.8 17,480 + +0.4 17,481 - +0.1 18,364 + +1.1 18,406 + +0.1 18,407 - +0.0 18,407 - -0.1 18,407 - +0.6 18,408 + -0.5 18,408 + +0.4 18,408 + -0.1 18,408 + +0.0 18,408 + -0.2 18,409 - -0.1 18,409 - -0.4 18,409 - +0.3 18,409 - +0.4 18,410 + +0.8 18,410 + +0.2 18,410 + -0.3 18,410 + +0.9 18,410 + +0.8 18,411 - -0.6 18,411 - +0.7 18,465 + -1.4 18,465 + -0.1
Or see this region's nucleotide sequence