Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22030 and ABIE41_RS22035 are separated by 33 nucleotides ABIE41_RS22035 and ABIE41_RS22040 overlap by 62 nucleotides ABIE41_RS22040 and ABIE41_RS22045 are separated by 204 nucleotides
ABIE41_RS22030: ABIE41_RS22030 - amidase, at 4,529,794 to 4,531,206
_RS22030
ABIE41_RS22035: ABIE41_RS22035 - hydantoinase/carbamoylase family amidase, at 4,531,240 to 4,532,013
_RS22035
ABIE41_RS22040: ABIE41_RS22040 - M20/M25/M40 family metallo-hydrolase, at 4,531,952 to 4,532,470
_RS22040
ABIE41_RS22045: ABIE41_RS22045 - methyl-accepting chemotaxis protein, at 4,532,675 to 4,534,663
_RS22045
Position (kb) 4531
4532
4533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4530.960 kb on + strand, within ABIE41_RS22030 at 4530.960 kb on + strand, within ABIE41_RS22030 at 4530.960 kb on + strand, within ABIE41_RS22030 at 4531.160 kb on + strand at 4531.161 kb on - strand at 4531.161 kb on - strand at 4531.242 kb on - strand at 4531.559 kb on + strand, within ABIE41_RS22035 at 4531.559 kb on + strand, within ABIE41_RS22035 at 4531.559 kb on + strand, within ABIE41_RS22035 at 4531.559 kb on + strand, within ABIE41_RS22035 at 4531.560 kb on - strand, within ABIE41_RS22035 at 4531.913 kb on + strand, within ABIE41_RS22035 at 4531.913 kb on + strand, within ABIE41_RS22035 at 4531.913 kb on + strand, within ABIE41_RS22035 at 4531.914 kb on - strand, within ABIE41_RS22035 at 4531.914 kb on - strand, within ABIE41_RS22035 at 4531.955 kb on + strand at 4531.955 kb on + strand at 4531.956 kb on - strand at 4532.049 kb on + strand, within ABIE41_RS22040 at 4532.049 kb on + strand, within ABIE41_RS22040 at 4532.049 kb on + strand, within ABIE41_RS22040 at 4532.049 kb on + strand, within ABIE41_RS22040 at 4532.050 kb on - strand, within ABIE41_RS22040 at 4532.050 kb on - strand, within ABIE41_RS22040 at 4532.050 kb on - strand, within ABIE41_RS22040 at 4532.050 kb on - strand, within ABIE41_RS22040 at 4532.156 kb on + strand, within ABIE41_RS22040 at 4532.157 kb on - strand, within ABIE41_RS22040 at 4532.194 kb on - strand, within ABIE41_RS22040 at 4532.222 kb on - strand, within ABIE41_RS22040 at 4532.543 kb on + strand at 4532.543 kb on + strand at 4532.544 kb on - strand at 4532.544 kb on - strand at 4532.544 kb on - strand at 4532.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,530,960 + ABIE41_RS22030 0.83 +0.4 4,530,960 + ABIE41_RS22030 0.83 -1.9 4,530,960 + ABIE41_RS22030 0.83 +1.8 4,531,160 + -1.5 4,531,161 - +0.2 4,531,161 - +0.2 4,531,242 - +0.4 4,531,559 + ABIE41_RS22035 0.41 +1.1 4,531,559 + ABIE41_RS22035 0.41 +1.8 4,531,559 + ABIE41_RS22035 0.41 +0.4 4,531,559 + ABIE41_RS22035 0.41 -1.2 4,531,560 - ABIE41_RS22035 0.41 -0.6 4,531,913 + ABIE41_RS22035 0.87 -0.5 4,531,913 + ABIE41_RS22035 0.87 -0.2 4,531,913 + ABIE41_RS22035 0.87 -1.9 4,531,914 - ABIE41_RS22035 0.87 +0.6 4,531,914 - ABIE41_RS22035 0.87 +0.3 4,531,955 + +1.0 4,531,955 + +1.0 4,531,956 - +1.2 4,532,049 + ABIE41_RS22040 0.19 -2.5 4,532,049 + ABIE41_RS22040 0.19 -0.0 4,532,049 + ABIE41_RS22040 0.19 +0.6 4,532,049 + ABIE41_RS22040 0.19 +0.2 4,532,050 - ABIE41_RS22040 0.19 +0.2 4,532,050 - ABIE41_RS22040 0.19 +0.3 4,532,050 - ABIE41_RS22040 0.19 +0.8 4,532,050 - ABIE41_RS22040 0.19 +0.2 4,532,156 + ABIE41_RS22040 0.39 -0.0 4,532,157 - ABIE41_RS22040 0.39 -1.5 4,532,194 - ABIE41_RS22040 0.47 +1.4 4,532,222 - ABIE41_RS22040 0.52 -2.8 4,532,543 + -0.9 4,532,543 + +2.7 4,532,544 - +0.2 4,532,544 - +0.2 4,532,544 - +0.6 4,532,544 - +0.7
Or see this region's nucleotide sequence