Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21215

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21205 and ABIE41_RS21210 are separated by 25 nucleotidesABIE41_RS21210 and ABIE41_RS21215 overlap by 4 nucleotidesABIE41_RS21215 and ABIE41_RS21220 overlap by 1 nucleotidesABIE41_RS21220 and ABIE41_RS21225 overlap by 1 nucleotides ABIE41_RS21205: ABIE41_RS21205 - hypothetical protein, at 4,359,706 to 4,360,092 _RS21205 ABIE41_RS21210: ABIE41_RS21210 - uracil-DNA glycosylase family protein, at 4,360,118 to 4,360,744 _RS21210 ABIE41_RS21215: ABIE41_RS21215 - hypothetical protein, at 4,360,741 to 4,361,208 _RS21215 ABIE41_RS21220: ABIE41_RS21220 - hypothetical protein, at 4,361,208 to 4,361,678 _RS21220 ABIE41_RS21225: ABIE41_RS21225 - glutathione S-transferase, at 4,361,678 to 4,362,289 _RS21225 Position (kb) 4360 4361 4362Strain fitness (log2 ratio) -2 -1 0 1 2at 4359.862 kb on + strand, within ABIE41_RS21205at 4360.078 kb on + strandat 4360.078 kb on + strandat 4360.078 kb on + strandat 4360.078 kb on + strandat 4360.078 kb on + strandat 4360.079 kb on - strandat 4360.079 kb on - strandat 4360.084 kb on + strandat 4360.084 kb on + strandat 4360.120 kb on - strandat 4360.332 kb on + strand, within ABIE41_RS21210at 4360.332 kb on + strand, within ABIE41_RS21210at 4360.332 kb on + strand, within ABIE41_RS21210at 4360.332 kb on + strand, within ABIE41_RS21210at 4360.332 kb on + strand, within ABIE41_RS21210at 4360.333 kb on - strand, within ABIE41_RS21210at 4360.495 kb on - strand, within ABIE41_RS21210at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.955 kb on + strand, within ABIE41_RS21215at 4360.959 kb on - strand, within ABIE41_RS21215at 4360.959 kb on - strand, within ABIE41_RS21215at 4361.276 kb on - strand, within ABIE41_RS21220at 4361.276 kb on - strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.373 kb on - strand, within ABIE41_RS21220at 4361.431 kb on + strand, within ABIE41_RS21220at 4361.431 kb on + strand, within ABIE41_RS21220at 4361.432 kb on - strand, within ABIE41_RS21220at 4361.432 kb on - strand, within ABIE41_RS21220at 4361.434 kb on + strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.437 kb on + strand, within ABIE41_RS21220at 4361.437 kb on + strand, within ABIE41_RS21220at 4361.554 kb on + strand, within ABIE41_RS21220at 4361.555 kb on - strand, within ABIE41_RS21220at 4361.797 kb on + strand, within ABIE41_RS21225at 4361.798 kb on - strand, within ABIE41_RS21225at 4362.072 kb on + strand, within ABIE41_RS21225at 4362.073 kb on - strand, within ABIE41_RS21225

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,359,862 + ABIE41_RS21205 0.40 -0.2
4,360,078 + -0.6
4,360,078 + -0.6
4,360,078 + -0.5
4,360,078 + +1.1
4,360,078 + +0.3
4,360,079 - +1.4
4,360,079 - -1.6
4,360,084 + -0.1
4,360,084 + +0.4
4,360,120 - -0.2
4,360,332 + ABIE41_RS21210 0.34 -0.5
4,360,332 + ABIE41_RS21210 0.34 -0.3
4,360,332 + ABIE41_RS21210 0.34 -0.5
4,360,332 + ABIE41_RS21210 0.34 -1.3
4,360,332 + ABIE41_RS21210 0.34 -0.1
4,360,333 - ABIE41_RS21210 0.34 -1.6
4,360,495 - ABIE41_RS21210 0.60 +0.4
4,360,892 + ABIE41_RS21215 0.32 -0.7
4,360,892 + ABIE41_RS21215 0.32 -0.2
4,360,892 + ABIE41_RS21215 0.32 +0.0
4,360,893 - ABIE41_RS21215 0.32 +0.0
4,360,893 - ABIE41_RS21215 0.32 +0.6
4,360,893 - ABIE41_RS21215 0.32 -0.1
4,360,893 - ABIE41_RS21215 0.32 +0.7
4,360,893 - ABIE41_RS21215 0.32 +0.1
4,360,955 + ABIE41_RS21215 0.46 +0.4
4,360,959 - ABIE41_RS21215 0.47 +0.4
4,360,959 - ABIE41_RS21215 0.47 -2.1
4,361,276 - ABIE41_RS21220 0.14 +0.3
4,361,276 - ABIE41_RS21220 0.14 +1.0
4,361,371 + ABIE41_RS21220 0.35 +0.3
4,361,371 + ABIE41_RS21220 0.35 +0.5
4,361,371 + ABIE41_RS21220 0.35 +0.2
4,361,371 + ABIE41_RS21220 0.35 +0.3
4,361,372 - ABIE41_RS21220 0.35 +1.0
4,361,372 - ABIE41_RS21220 0.35 -0.1
4,361,372 - ABIE41_RS21220 0.35 +0.0
4,361,372 - ABIE41_RS21220 0.35 +0.9
4,361,372 - ABIE41_RS21220 0.35 -1.7
4,361,373 - ABIE41_RS21220 0.35 -0.7
4,361,431 + ABIE41_RS21220 0.47 -0.2
4,361,431 + ABIE41_RS21220 0.47 -0.3
4,361,432 - ABIE41_RS21220 0.48 +0.1
4,361,432 - ABIE41_RS21220 0.48 -2.2
4,361,434 + ABIE41_RS21220 0.48 +0.6
4,361,435 - ABIE41_RS21220 0.48 -0.1
4,361,435 - ABIE41_RS21220 0.48 +2.3
4,361,435 - ABIE41_RS21220 0.48 +0.2
4,361,435 - ABIE41_RS21220 0.48 +1.3
4,361,437 + ABIE41_RS21220 0.49 -0.8
4,361,437 + ABIE41_RS21220 0.49 +0.2
4,361,554 + ABIE41_RS21220 0.73 -0.6
4,361,555 - ABIE41_RS21220 0.74 +1.1
4,361,797 + ABIE41_RS21225 0.19 -1.7
4,361,798 - ABIE41_RS21225 0.20 +0.4
4,362,072 + ABIE41_RS21225 0.64 -1.8
4,362,073 - ABIE41_RS21225 0.65 +1.2

Or see this region's nucleotide sequence