Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21090 and ABIE41_RS21095 are separated by 173 nucleotides ABIE41_RS21095 and ABIE41_RS21100 are separated by 187 nucleotides ABIE41_RS21100 and ABIE41_RS21105 are separated by 117 nucleotides
ABIE41_RS21090: ABIE41_RS21090 - ornithine cyclodeaminase family protein, at 4,337,007 to 4,338,017
_RS21090
ABIE41_RS21095: ABIE41_RS21095 - hypothetical protein, at 4,338,191 to 4,338,442
_RS21095
ABIE41_RS21100: ABIE41_RS21100 - L,D-transpeptidase, at 4,338,630 to 4,339,208
_RS21100
ABIE41_RS21105: ABIE41_RS21105 - amidase, at 4,339,326 to 4,340,498
_RS21105
Position (kb) 4338
4339
4340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4337.761 kb on + strand, within ABIE41_RS21090 at 4337.761 kb on + strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.996 kb on + strand at 4337.996 kb on + strand at 4337.997 kb on - strand at 4337.998 kb on + strand at 4337.998 kb on + strand at 4337.999 kb on - strand at 4338.064 kb on - strand at 4338.064 kb on - strand at 4338.064 kb on - strand at 4338.119 kb on + strand at 4338.119 kb on + strand at 4338.120 kb on - strand at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.792 kb on + strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4339.164 kb on + strand at 4339.164 kb on + strand at 4339.165 kb on - strand at 4339.675 kb on + strand, within ABIE41_RS21105 at 4339.676 kb on - strand, within ABIE41_RS21105 at 4339.755 kb on + strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.169 kb on - strand, within ABIE41_RS21105
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,337,761 + ABIE41_RS21090 0.75 +0.5 4,337,761 + ABIE41_RS21090 0.75 -0.7 4,337,762 - ABIE41_RS21090 0.75 -0.7 4,337,762 - ABIE41_RS21090 0.75 -1.7 4,337,762 - ABIE41_RS21090 0.75 -0.5 4,337,762 - ABIE41_RS21090 0.75 -0.4 4,337,762 - ABIE41_RS21090 0.75 -0.7 4,337,762 - ABIE41_RS21090 0.75 +1.0 4,337,762 - ABIE41_RS21090 0.75 -3.5 4,337,996 + -1.1 4,337,996 + +2.7 4,337,997 - -1.3 4,337,998 + -0.3 4,337,998 + +0.8 4,337,999 - -2.7 4,338,064 - -0.2 4,338,064 - -3.2 4,338,064 - -1.5 4,338,119 + -0.5 4,338,119 + +0.3 4,338,120 - +1.9 4,338,374 + ABIE41_RS21095 0.73 -2.7 4,338,374 + ABIE41_RS21095 0.73 -0.7 4,338,374 + ABIE41_RS21095 0.73 +0.4 4,338,374 + ABIE41_RS21095 0.73 -0.3 4,338,374 + ABIE41_RS21095 0.73 +3.6 4,338,374 + ABIE41_RS21095 0.73 -1.8 4,338,375 - ABIE41_RS21095 0.73 +0.4 4,338,375 - ABIE41_RS21095 0.73 +0.3 4,338,375 - ABIE41_RS21095 0.73 -0.1 4,338,375 - ABIE41_RS21095 0.73 -3.5 4,338,375 - ABIE41_RS21095 0.73 -0.6 4,338,375 - ABIE41_RS21095 0.73 -2.8 4,338,792 + ABIE41_RS21100 0.28 +0.0 4,338,793 - ABIE41_RS21100 0.28 -1.9 4,338,793 - ABIE41_RS21100 0.28 -0.5 4,338,849 + ABIE41_RS21100 0.38 -1.1 4,338,849 + ABIE41_RS21100 0.38 -0.3 4,339,164 + -0.7 4,339,164 + -1.0 4,339,165 - -0.5 4,339,675 + ABIE41_RS21105 0.30 -2.0 4,339,676 - ABIE41_RS21105 0.30 +0.4 4,339,755 + ABIE41_RS21105 0.37 -0.8 4,339,756 - ABIE41_RS21105 0.37 +0.9 4,339,756 - ABIE41_RS21105 0.37 -2.2 4,340,168 + ABIE41_RS21105 0.72 -2.4 4,340,168 + ABIE41_RS21105 0.72 +0.3 4,340,169 - ABIE41_RS21105 0.72 +0.9
Or see this region's nucleotide sequence