Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21030 and ABIE41_RS21035 overlap by 4 nucleotides ABIE41_RS21035 and ABIE41_RS21040 are separated by 41 nucleotides ABIE41_RS21040 and ABIE41_RS21045 are separated by 40 nucleotides
ABIE41_RS21030: ABIE41_RS21030 - cytochrome o ubiquinol oxidase subunit III, at 4,326,896 to 4,327,528
_RS21030
ABIE41_RS21035: ABIE41_RS21035 - cytochrome o ubiquinol oxidase subunit IV, at 4,327,525 to 4,327,908
_RS21035
ABIE41_RS21040: ABIE41_RS21040 - SURF1 family protein, at 4,327,950 to 4,328,663
_RS21040
ABIE41_RS21045: ABIE41_RS21045 - ATP-binding protein, at 4,328,704 to 4,329,951
_RS21045
Position (kb) 4327
4328
4329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4327.005 kb on - strand, within ABIE41_RS21030 at 4327.005 kb on - strand, within ABIE41_RS21030 at 4327.049 kb on + strand, within ABIE41_RS21030 at 4327.049 kb on + strand, within ABIE41_RS21030 at 4327.050 kb on - strand, within ABIE41_RS21030 at 4327.070 kb on + strand, within ABIE41_RS21030 at 4327.070 kb on + strand, within ABIE41_RS21030 at 4327.070 kb on + strand, within ABIE41_RS21030 at 4327.262 kb on + strand, within ABIE41_RS21030 at 4327.262 kb on + strand, within ABIE41_RS21030 at 4327.263 kb on - strand, within ABIE41_RS21030 at 4327.505 kb on + strand at 4327.562 kb on - strand at 4327.606 kb on + strand, within ABIE41_RS21035 at 4327.606 kb on + strand, within ABIE41_RS21035 at 4327.607 kb on - strand, within ABIE41_RS21035 at 4327.609 kb on - strand, within ABIE41_RS21035 at 4327.609 kb on - strand, within ABIE41_RS21035 at 4327.609 kb on - strand, within ABIE41_RS21035 at 4327.736 kb on + strand, within ABIE41_RS21035 at 4327.747 kb on + strand, within ABIE41_RS21035 at 4327.747 kb on + strand, within ABIE41_RS21035 at 4327.747 kb on + strand, within ABIE41_RS21035 at 4327.748 kb on - strand, within ABIE41_RS21035 at 4327.748 kb on - strand, within ABIE41_RS21035 at 4327.855 kb on + strand, within ABIE41_RS21035 at 4327.855 kb on + strand, within ABIE41_RS21035 at 4327.856 kb on - strand, within ABIE41_RS21035 at 4327.856 kb on - strand, within ABIE41_RS21035 at 4327.856 kb on - strand, within ABIE41_RS21035 at 4327.890 kb on + strand at 4327.890 kb on + strand at 4327.890 kb on + strand at 4328.131 kb on - strand, within ABIE41_RS21040 at 4328.469 kb on + strand, within ABIE41_RS21040 at 4328.470 kb on - strand, within ABIE41_RS21040 at 4328.559 kb on + strand, within ABIE41_RS21040 at 4328.617 kb on + strand at 4328.661 kb on + strand at 4328.662 kb on - strand at 4328.662 kb on - strand at 4328.932 kb on + strand, within ABIE41_RS21045 at 4328.932 kb on + strand, within ABIE41_RS21045 at 4328.932 kb on + strand, within ABIE41_RS21045 at 4328.933 kb on - strand, within ABIE41_RS21045 at 4328.971 kb on + strand, within ABIE41_RS21045 at 4328.972 kb on - strand, within ABIE41_RS21045 at 4328.972 kb on - strand, within ABIE41_RS21045 at 4328.972 kb on - strand, within ABIE41_RS21045 at 4329.124 kb on + strand, within ABIE41_RS21045 at 4329.124 kb on + strand, within ABIE41_RS21045 at 4329.125 kb on - strand, within ABIE41_RS21045 at 4329.261 kb on + strand, within ABIE41_RS21045 at 4329.562 kb on + strand, within ABIE41_RS21045 at 4329.562 kb on + strand, within ABIE41_RS21045 at 4329.563 kb on - strand, within ABIE41_RS21045
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,327,005 - ABIE41_RS21030 0.17 +0.0 4,327,005 - ABIE41_RS21030 0.17 +0.6 4,327,049 + ABIE41_RS21030 0.24 +0.2 4,327,049 + ABIE41_RS21030 0.24 +0.2 4,327,050 - ABIE41_RS21030 0.24 -2.6 4,327,070 + ABIE41_RS21030 0.27 +0.9 4,327,070 + ABIE41_RS21030 0.27 -1.6 4,327,070 + ABIE41_RS21030 0.27 -1.6 4,327,262 + ABIE41_RS21030 0.58 -1.5 4,327,262 + ABIE41_RS21030 0.58 -2.3 4,327,263 - ABIE41_RS21030 0.58 +0.1 4,327,505 + -0.9 4,327,562 - +0.9 4,327,606 + ABIE41_RS21035 0.21 -1.1 4,327,606 + ABIE41_RS21035 0.21 +0.5 4,327,607 - ABIE41_RS21035 0.21 -0.4 4,327,609 - ABIE41_RS21035 0.22 -1.6 4,327,609 - ABIE41_RS21035 0.22 +2.7 4,327,609 - ABIE41_RS21035 0.22 +1.4 4,327,736 + ABIE41_RS21035 0.55 +0.8 4,327,747 + ABIE41_RS21035 0.58 -0.1 4,327,747 + ABIE41_RS21035 0.58 +1.6 4,327,747 + ABIE41_RS21035 0.58 +0.2 4,327,748 - ABIE41_RS21035 0.58 +2.0 4,327,748 - ABIE41_RS21035 0.58 -1.0 4,327,855 + ABIE41_RS21035 0.86 -1.4 4,327,855 + ABIE41_RS21035 0.86 -0.4 4,327,856 - ABIE41_RS21035 0.86 +0.3 4,327,856 - ABIE41_RS21035 0.86 +1.1 4,327,856 - ABIE41_RS21035 0.86 -1.3 4,327,890 + -0.1 4,327,890 + +0.0 4,327,890 + -0.1 4,328,131 - ABIE41_RS21040 0.25 +0.0 4,328,469 + ABIE41_RS21040 0.73 -0.0 4,328,470 - ABIE41_RS21040 0.73 -1.8 4,328,559 + ABIE41_RS21040 0.85 -2.6 4,328,617 + +1.3 4,328,661 + +0.9 4,328,662 - -1.6 4,328,662 - -1.4 4,328,932 + ABIE41_RS21045 0.18 +1.9 4,328,932 + ABIE41_RS21045 0.18 +0.7 4,328,932 + ABIE41_RS21045 0.18 +1.3 4,328,933 - ABIE41_RS21045 0.18 +0.8 4,328,971 + ABIE41_RS21045 0.21 +1.6 4,328,972 - ABIE41_RS21045 0.21 -0.4 4,328,972 - ABIE41_RS21045 0.21 -0.7 4,328,972 - ABIE41_RS21045 0.21 -1.7 4,329,124 + ABIE41_RS21045 0.34 -1.4 4,329,124 + ABIE41_RS21045 0.34 -1.7 4,329,125 - ABIE41_RS21045 0.34 +0.8 4,329,261 + ABIE41_RS21045 0.45 -0.3 4,329,562 + ABIE41_RS21045 0.69 -2.4 4,329,562 + ABIE41_RS21045 0.69 +0.0 4,329,563 - ABIE41_RS21045 0.69 -1.7
Or see this region's nucleotide sequence