Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20775 and ABIE41_RS20780 are separated by 239 nucleotides ABIE41_RS20780 and ABIE41_RS20785 are separated by 19 nucleotides ABIE41_RS20785 and ABIE41_RS20790 are separated by 16 nucleotides ABIE41_RS20790 and ABIE41_RS20795 are separated by 128 nucleotides
ABIE41_RS20775: ABIE41_RS20775 - SDR family oxidoreductase, at 4,272,700 to 4,273,494
_RS20775
ABIE41_RS20780: ABIE41_RS20780 - LysR substrate-binding domain-containing protein, at 4,273,734 to 4,274,606
_RS20780
ABIE41_RS20785: ABIE41_RS20785 - hypothetical protein, at 4,274,626 to 4,274,913
_RS20785
ABIE41_RS20790: ABIE41_RS20790 - hypothetical protein, at 4,274,930 to 4,275,379
_RS20790
ABIE41_RS20795: ABIE41_RS20795 - DNA gyrase inhibitor YacG, at 4,275,508 to 4,275,747
_RS20795
Position (kb) 4273
4274
4275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4272.755 kb on + strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.872 kb on + strand, within ABIE41_RS20775 at 4272.872 kb on + strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.957 kb on - strand, within ABIE41_RS20775 at 4273.007 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.011 kb on - strand, within ABIE41_RS20775 at 4273.019 kb on + strand, within ABIE41_RS20775 at 4273.035 kb on - strand, within ABIE41_RS20775 at 4273.035 kb on - strand, within ABIE41_RS20775 at 4273.093 kb on - strand, within ABIE41_RS20775 at 4273.199 kb on + strand, within ABIE41_RS20775 at 4273.199 kb on + strand, within ABIE41_RS20775 at 4273.654 kb on + strand at 4273.654 kb on + strand at 4273.654 kb on + strand at 4273.655 kb on - strand at 4273.655 kb on - strand at 4273.704 kb on - strand at 4273.908 kb on + strand, within ABIE41_RS20780 at 4273.924 kb on + strand, within ABIE41_RS20780 at 4273.924 kb on + strand, within ABIE41_RS20780 at 4273.925 kb on - strand, within ABIE41_RS20780 at 4274.112 kb on + strand, within ABIE41_RS20780 at 4274.112 kb on + strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.242 kb on - strand, within ABIE41_RS20780 at 4274.394 kb on + strand, within ABIE41_RS20780 at 4274.394 kb on + strand, within ABIE41_RS20780 at 4274.903 kb on + strand at 4274.904 kb on - strand at 4275.033 kb on + strand, within ABIE41_RS20790 at 4275.034 kb on - strand, within ABIE41_RS20790 at 4275.078 kb on + strand, within ABIE41_RS20790 at 4275.078 kb on + strand, within ABIE41_RS20790 at 4275.078 kb on + strand, within ABIE41_RS20790 at 4275.078 kb on + strand, within ABIE41_RS20790 at 4275.079 kb on - strand, within ABIE41_RS20790 at 4275.079 kb on - strand, within ABIE41_RS20790 at 4275.102 kb on + strand, within ABIE41_RS20790 at 4275.145 kb on - strand, within ABIE41_RS20790 at 4275.145 kb on - strand, within ABIE41_RS20790 at 4275.157 kb on - strand, within ABIE41_RS20790 at 4275.172 kb on - strand, within ABIE41_RS20790 at 4275.172 kb on - strand, within ABIE41_RS20790 at 4275.195 kb on + strand, within ABIE41_RS20790 at 4275.300 kb on + strand, within ABIE41_RS20790 at 4275.300 kb on + strand, within ABIE41_RS20790 at 4275.581 kb on + strand, within ABIE41_RS20795 at 4275.581 kb on + strand, within ABIE41_RS20795 at 4275.582 kb on - strand, within ABIE41_RS20795 at 4275.582 kb on - strand, within ABIE41_RS20795 at 4275.582 kb on - strand, within ABIE41_RS20795 at 4275.582 kb on - strand, within ABIE41_RS20795 at 4275.582 kb on - strand, within ABIE41_RS20795
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,272,755 + -0.2 4,272,756 - +0.5 4,272,756 - -3.0 4,272,756 - -1.3 4,272,756 - -0.9 4,272,872 + ABIE41_RS20775 0.22 +1.4 4,272,872 + ABIE41_RS20775 0.22 -0.9 4,272,873 - ABIE41_RS20775 0.22 -2.0 4,272,873 - ABIE41_RS20775 0.22 -1.3 4,272,873 - ABIE41_RS20775 0.22 -1.1 4,272,873 - ABIE41_RS20775 0.22 +1.4 4,272,957 - ABIE41_RS20775 0.32 +0.1 4,273,007 + ABIE41_RS20775 0.39 +0.1 4,273,010 + ABIE41_RS20775 0.39 +0.4 4,273,010 + ABIE41_RS20775 0.39 -0.9 4,273,010 + ABIE41_RS20775 0.39 +0.6 4,273,010 + ABIE41_RS20775 0.39 +0.7 4,273,011 - ABIE41_RS20775 0.39 -0.3 4,273,019 + ABIE41_RS20775 0.40 +0.3 4,273,035 - ABIE41_RS20775 0.42 +0.2 4,273,035 - ABIE41_RS20775 0.42 -0.3 4,273,093 - ABIE41_RS20775 0.49 +0.3 4,273,199 + ABIE41_RS20775 0.63 +2.1 4,273,199 + ABIE41_RS20775 0.63 +0.4 4,273,654 + -0.3 4,273,654 + -0.3 4,273,654 + -2.3 4,273,655 - +0.5 4,273,655 - +1.3 4,273,704 - +0.3 4,273,908 + ABIE41_RS20780 0.20 -1.5 4,273,924 + ABIE41_RS20780 0.22 -0.1 4,273,924 + ABIE41_RS20780 0.22 +0.2 4,273,925 - ABIE41_RS20780 0.22 +0.0 4,274,112 + ABIE41_RS20780 0.43 -0.3 4,274,112 + ABIE41_RS20780 0.43 +2.3 4,274,113 - ABIE41_RS20780 0.43 +1.0 4,274,113 - ABIE41_RS20780 0.43 +0.3 4,274,113 - ABIE41_RS20780 0.43 +1.4 4,274,242 - ABIE41_RS20780 0.58 -1.5 4,274,394 + ABIE41_RS20780 0.76 -1.4 4,274,394 + ABIE41_RS20780 0.76 -0.9 4,274,903 + +1.4 4,274,904 - -1.2 4,275,033 + ABIE41_RS20790 0.23 -0.6 4,275,034 - ABIE41_RS20790 0.23 -1.9 4,275,078 + ABIE41_RS20790 0.33 -0.1 4,275,078 + ABIE41_RS20790 0.33 +1.4 4,275,078 + ABIE41_RS20790 0.33 +0.0 4,275,078 + ABIE41_RS20790 0.33 -1.0 4,275,079 - ABIE41_RS20790 0.33 +0.7 4,275,079 - ABIE41_RS20790 0.33 -3.0 4,275,102 + ABIE41_RS20790 0.38 +1.0 4,275,145 - ABIE41_RS20790 0.48 +0.5 4,275,145 - ABIE41_RS20790 0.48 +0.7 4,275,157 - ABIE41_RS20790 0.50 +0.3 4,275,172 - ABIE41_RS20790 0.54 -1.7 4,275,172 - ABIE41_RS20790 0.54 -0.6 4,275,195 + ABIE41_RS20790 0.59 +0.4 4,275,300 + ABIE41_RS20790 0.82 +1.3 4,275,300 + ABIE41_RS20790 0.82 -0.4 4,275,581 + ABIE41_RS20795 0.30 -1.7 4,275,581 + ABIE41_RS20795 0.30 +0.4 4,275,582 - ABIE41_RS20795 0.31 +2.7 4,275,582 - ABIE41_RS20795 0.31 +0.1 4,275,582 - ABIE41_RS20795 0.31 +2.1 4,275,582 - ABIE41_RS20795 0.31 -0.1 4,275,582 - ABIE41_RS20795 0.31 -1.4
Or see this region's nucleotide sequence