Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14190

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14185 and ABIE41_RS14190 are separated by 214 nucleotidesABIE41_RS14190 and ABIE41_RS14195 are separated by 236 nucleotidesABIE41_RS14195 and ABIE41_RS14200 are separated by 16 nucleotides ABIE41_RS14185: ABIE41_RS14185 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,905,183 to 2,906,028 _RS14185 ABIE41_RS14190: ABIE41_RS14190 - tRNA-Tyr, at 2,906,243 to 2,906,327 _RS14190 ABIE41_RS14195: ABIE41_RS14195 - hypothetical protein, at 2,906,564 to 2,907,070 _RS14195 ABIE41_RS14200: ABIE41_RS14200 - L,D-transpeptidase, at 2,907,087 to 2,907,722 _RS14200 Position (kb) 2906 2907Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2906.511 kb on + strandat 2906.664 kb on + strand, within ABIE41_RS14195at 2906.665 kb on - strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.829 kb on - strand, within ABIE41_RS14195at 2906.829 kb on - strand, within ABIE41_RS14195at 2907.053 kb on + strandat 2907.053 kb on + strandat 2907.053 kb on + strandat 2907.053 kb on + strandat 2907.053 kb on + strandat 2907.053 kb on + strandat 2907.054 kb on - strandat 2907.054 kb on - strandat 2907.054 kb on - strandat 2907.054 kb on - strandat 2907.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,905,683 - ABIE41_RS14185 0.59 -1.4
2,905,683 - ABIE41_RS14185 0.59 -0.8
2,905,683 - ABIE41_RS14185 0.59 +0.1
2,905,683 - ABIE41_RS14185 0.59 +0.3
2,906,511 + +0.4
2,906,664 + ABIE41_RS14195 0.20 -0.3
2,906,665 - ABIE41_RS14195 0.20 -0.3
2,906,828 + ABIE41_RS14195 0.52 +1.1
2,906,828 + ABIE41_RS14195 0.52 +1.1
2,906,828 + ABIE41_RS14195 0.52 -0.8
2,906,828 + ABIE41_RS14195 0.52 -0.7
2,906,828 + ABIE41_RS14195 0.52 -0.4
2,906,828 + ABIE41_RS14195 0.52 +1.3
2,906,828 + ABIE41_RS14195 0.52 +1.0
2,906,828 + ABIE41_RS14195 0.52 +0.5
2,906,828 + ABIE41_RS14195 0.52 +0.7
2,906,829 - ABIE41_RS14195 0.52 +0.4
2,906,829 - ABIE41_RS14195 0.52 -1.0
2,907,053 + -4.0
2,907,053 + +1.3
2,907,053 + -0.6
2,907,053 + -1.0
2,907,053 + +1.9
2,907,053 + -0.5
2,907,054 - +1.7
2,907,054 - +0.9
2,907,054 - +0.3
2,907,054 - +1.9
2,907,147 + -0.1

Or see this region's nucleotide sequence