Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12565

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS12560 and ABIE41_RS12565 overlap by 4 nucleotidesABIE41_RS12565 and ABIE41_RS12570 overlap by 4 nucleotides ABIE41_RS12560: ABIE41_RS12560 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,571,726 to 2,572,784 _RS12560 ABIE41_RS12565: ABIE41_RS12565 - hypothetical protein, at 2,572,781 to 2,573,167 _RS12565 ABIE41_RS12570: ABIE41_RS12570 - penicillin-binding protein 2, at 2,573,164 to 2,574,924 _RS12570 Position (kb) 2572 2573 2574Strain fitness (log2 ratio) -3 -2 -1 0 1at 2571.849 kb on + strand, within ABIE41_RS12560at 2572.227 kb on + strand, within ABIE41_RS12560at 2572.233 kb on + strand, within ABIE41_RS12560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
2,571,849 + ABIE41_RS12560 0.12 -0.5
2,572,227 + ABIE41_RS12560 0.47 -3.3
2,572,233 + ABIE41_RS12560 0.48 -0.7

Or see this region's nucleotide sequence