Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11410 and ABIE41_RS11415 overlap by 29 nucleotides ABIE41_RS11415 and ABIE41_RS11420 are separated by 7 nucleotides ABIE41_RS11420 and ABIE41_RS11425 overlap by 4 nucleotides ABIE41_RS11425 and ABIE41_RS11430 are separated by 67 nucleotides
ABIE41_RS11410: ABIE41_RS11410 - DUF1176 domain-containing protein, at 2,343,233 to 2,344,324
_RS11410
ABIE41_RS11415: ABIE41_RS11415 - molybdenum cofactor biosynthesis protein MoaE, at 2,344,296 to 2,344,751
_RS11415
ABIE41_RS11420: ABIE41_RS11420 - molybdopterin converting factor subunit 1, at 2,344,759 to 2,345,058
_RS11420
ABIE41_RS11425: ABIE41_RS11425 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,345,055 to 2,345,666
_RS11425
ABIE41_RS11430: ABIE41_RS11430 - excinuclease ABC subunit UvrC, at 2,345,734 to 2,347,876
_RS11430
Position (kb)
2344
2345
2346 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2344.297 kb on + strand at 2344.298 kb on - strand at 2344.408 kb on + strand, within ABIE41_RS11415 at 2344.408 kb on + strand, within ABIE41_RS11415 at 2344.408 kb on + strand, within ABIE41_RS11415 at 2344.409 kb on - strand, within ABIE41_RS11415 at 2344.504 kb on + strand, within ABIE41_RS11415 at 2344.595 kb on - strand, within ABIE41_RS11415 at 2344.884 kb on - strand, within ABIE41_RS11420 at 2344.884 kb on - strand, within ABIE41_RS11420 at 2344.884 kb on - strand, within ABIE41_RS11420 at 2344.997 kb on + strand, within ABIE41_RS11420 at 2345.750 kb on + strand at 2345.751 kb on - strand at 2345.751 kb on - strand at 2345.751 kb on - strand at 2345.987 kb on + strand, within ABIE41_RS11430 at 2345.987 kb on + strand, within ABIE41_RS11430 at 2345.988 kb on - strand, within ABIE41_RS11430 at 2345.988 kb on - strand, within ABIE41_RS11430
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,344,297 + +1.0 2,344,298 - -2.8 2,344,408 + ABIE41_RS11415 0.25 -0.7 2,344,408 + ABIE41_RS11415 0.25 +1.2 2,344,408 + ABIE41_RS11415 0.25 +0.9 2,344,409 - ABIE41_RS11415 0.25 -0.0 2,344,504 + ABIE41_RS11415 0.46 +1.2 2,344,595 - ABIE41_RS11415 0.66 +0.2 2,344,884 - ABIE41_RS11420 0.42 +0.9 2,344,884 - ABIE41_RS11420 0.42 -2.2 2,344,884 - ABIE41_RS11420 0.42 -1.3 2,344,997 + ABIE41_RS11420 0.79 -0.2 2,345,750 + -0.4 2,345,751 - -1.3 2,345,751 - +1.4 2,345,751 - +0.9 2,345,987 + ABIE41_RS11430 0.12 +0.2 2,345,987 + ABIE41_RS11430 0.12 +0.3 2,345,988 - ABIE41_RS11430 0.12 -1.6 2,345,988 - ABIE41_RS11430 0.12 +2.0
Or see this region's nucleotide sequence