Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08650

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08645 and ABIE41_RS08650 are separated by 276 nucleotidesABIE41_RS08650 and ABIE41_RS08655 are separated by 235 nucleotides ABIE41_RS08645: ABIE41_RS08645 - methyl-accepting chemotaxis protein, at 1,786,750 to 1,788,822 _RS08645 ABIE41_RS08650: ABIE41_RS08650 - methyl-accepting chemotaxis protein, at 1,789,099 to 1,791,450 _RS08650 ABIE41_RS08655: ABIE41_RS08655 - mucoidy inhibitor MuiA family protein, at 1,791,686 to 1,793,404 _RS08655 Position (kb) 1789 1790 1791 1792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1789.031 kb on + strandat 1789.041 kb on - strandat 1789.041 kb on - strandat 1789.104 kb on + strandat 1789.105 kb on - strandat 1789.119 kb on - strandat 1789.297 kb on + strandat 1789.297 kb on + strandat 1789.297 kb on + strandat 1789.297 kb on + strandat 1791.649 kb on + strandat 1791.669 kb on + strandat 1791.669 kb on + strandat 1791.670 kb on - strandat 1791.670 kb on - strandat 1792.346 kb on + strand, within ABIE41_RS08655at 1792.347 kb on - strand, within ABIE41_RS08655at 1792.379 kb on + strand, within ABIE41_RS08655at 1792.379 kb on + strand, within ABIE41_RS08655at 1792.380 kb on - strand, within ABIE41_RS08655at 1792.395 kb on + strand, within ABIE41_RS08655

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,789,031 + +2.1
1,789,041 - +0.7
1,789,041 - -0.2
1,789,104 + -3.3
1,789,105 - +1.0
1,789,119 - +0.3
1,789,297 + +1.2
1,789,297 + +0.4
1,789,297 + +0.3
1,789,297 + -2.3
1,791,649 + -1.7
1,791,669 + -1.2
1,791,669 + -3.3
1,791,670 - +0.7
1,791,670 - +0.3
1,792,346 + ABIE41_RS08655 0.38 +1.1
1,792,347 - ABIE41_RS08655 0.38 -0.2
1,792,379 + ABIE41_RS08655 0.40 +0.1
1,792,379 + ABIE41_RS08655 0.40 +0.2
1,792,380 - ABIE41_RS08655 0.40 -2.8
1,792,395 + ABIE41_RS08655 0.41 +0.7

Or see this region's nucleotide sequence