Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06340

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06335 and ABIE41_RS06340 are separated by 54 nucleotidesABIE41_RS06340 and ABIE41_RS06345 are separated by 250 nucleotides ABIE41_RS06335: ABIE41_RS06335 - GTPase ObgE, at 1,304,429 to 1,305,472 _RS06335 ABIE41_RS06340: ABIE41_RS06340 - LysR family transcriptional regulator, at 1,305,527 to 1,306,393 _RS06340 ABIE41_RS06345: ABIE41_RS06345 - DMT family transporter, at 1,306,644 to 1,307,552 _RS06345 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1305.484 kb on - strandat 1306.086 kb on + strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.418 kb on + strandat 1306.458 kb on + strandat 1306.469 kb on + strandat 1306.632 kb on + strandat 1306.632 kb on + strandat 1306.632 kb on + strandat 1306.633 kb on - strandat 1306.633 kb on - strandat 1306.929 kb on + strand, within ABIE41_RS06345at 1306.929 kb on + strand, within ABIE41_RS06345at 1306.930 kb on - strand, within ABIE41_RS06345at 1306.930 kb on - strand, within ABIE41_RS06345at 1306.930 kb on - strand, within ABIE41_RS06345at 1306.930 kb on - strand, within ABIE41_RS06345at 1306.930 kb on - strand, within ABIE41_RS06345at 1307.175 kb on + strand, within ABIE41_RS06345at 1307.175 kb on + strand, within ABIE41_RS06345at 1307.176 kb on - strand, within ABIE41_RS06345at 1307.176 kb on - strand, within ABIE41_RS06345at 1307.176 kb on - strand, within ABIE41_RS06345at 1307.184 kb on + strand, within ABIE41_RS06345at 1307.184 kb on + strand, within ABIE41_RS06345at 1307.184 kb on + strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.185 kb on - strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.186 kb on + strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345at 1307.187 kb on - strand, within ABIE41_RS06345

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,305,484 - -1.4
1,306,086 + ABIE41_RS06340 0.64 +0.4
1,306,087 - ABIE41_RS06340 0.65 -1.9
1,306,087 - ABIE41_RS06340 0.65 +0.0
1,306,087 - ABIE41_RS06340 0.65 +0.8
1,306,087 - ABIE41_RS06340 0.65 -1.4
1,306,087 - ABIE41_RS06340 0.65 +0.4
1,306,087 - ABIE41_RS06340 0.65 -3.4
1,306,087 - ABIE41_RS06340 0.65 +1.6
1,306,418 + -0.2
1,306,458 + +0.8
1,306,469 + +0.4
1,306,632 + -2.3
1,306,632 + +0.9
1,306,632 + +2.4
1,306,633 - -0.7
1,306,633 - +3.5
1,306,929 + ABIE41_RS06345 0.31 -0.0
1,306,929 + ABIE41_RS06345 0.31 +0.6
1,306,930 - ABIE41_RS06345 0.31 -1.4
1,306,930 - ABIE41_RS06345 0.31 +0.4
1,306,930 - ABIE41_RS06345 0.31 +0.7
1,306,930 - ABIE41_RS06345 0.31 +0.3
1,306,930 - ABIE41_RS06345 0.31 +0.2
1,307,175 + ABIE41_RS06345 0.58 +0.7
1,307,175 + ABIE41_RS06345 0.58 +1.0
1,307,176 - ABIE41_RS06345 0.59 +0.7
1,307,176 - ABIE41_RS06345 0.59 +0.3
1,307,176 - ABIE41_RS06345 0.59 +1.0
1,307,184 + ABIE41_RS06345 0.59 -0.4
1,307,184 + ABIE41_RS06345 0.59 +0.6
1,307,184 + ABIE41_RS06345 0.59 +0.8
1,307,185 - ABIE41_RS06345 0.60 -0.1
1,307,185 - ABIE41_RS06345 0.60 +1.3
1,307,185 - ABIE41_RS06345 0.60 +0.5
1,307,185 - ABIE41_RS06345 0.60 -0.0
1,307,185 - ABIE41_RS06345 0.60 -1.7
1,307,185 - ABIE41_RS06345 0.60 +1.9
1,307,186 + ABIE41_RS06345 0.60 -0.7
1,307,186 + ABIE41_RS06345 0.60 +0.8
1,307,186 + ABIE41_RS06345 0.60 -0.2
1,307,186 + ABIE41_RS06345 0.60 -0.1
1,307,186 + ABIE41_RS06345 0.60 -1.0
1,307,186 + ABIE41_RS06345 0.60 -0.1
1,307,186 + ABIE41_RS06345 0.60 -0.8
1,307,186 + ABIE41_RS06345 0.60 -0.0
1,307,186 + ABIE41_RS06345 0.60 +0.3
1,307,187 - ABIE41_RS06345 0.60 +1.9
1,307,187 - ABIE41_RS06345 0.60 +0.6
1,307,187 - ABIE41_RS06345 0.60 -0.9
1,307,187 - ABIE41_RS06345 0.60 +0.1
1,307,187 - ABIE41_RS06345 0.60 -0.2
1,307,187 - ABIE41_RS06345 0.60 -2.4
1,307,187 - ABIE41_RS06345 0.60 +0.8
1,307,187 - ABIE41_RS06345 0.60 -1.5
1,307,187 - ABIE41_RS06345 0.60 -2.4
1,307,187 - ABIE41_RS06345 0.60 -0.1
1,307,187 - ABIE41_RS06345 0.60 +0.0
1,307,187 - ABIE41_RS06345 0.60 +0.0
1,307,187 - ABIE41_RS06345 0.60 -1.2
1,307,187 - ABIE41_RS06345 0.60 -0.4
1,307,187 - ABIE41_RS06345 0.60 +0.6

Or see this region's nucleotide sequence