Experiment: L-Methionine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23475 and ABIE40_RS23480 are separated by 9 nucleotides ABIE40_RS23480 and ABIE40_RS23485 are separated by 24 nucleotides ABIE40_RS23485 and ABIE40_RS23490 overlap by 4 nucleotides ABIE40_RS23490 and ABIE40_RS23495 are separated by 122 nucleotides
ABIE40_RS23475: ABIE40_RS23475 - ABC transporter permease subunit, at 842,921 to 843,589
_RS23475
ABIE40_RS23480: ABIE40_RS23480 - ABC transporter permease subunit, at 843,599 to 844,300
_RS23480
ABIE40_RS23485: ABIE40_RS23485 - amino acid ABC transporter ATP-binding protein, at 844,325 to 845,101
_RS23485
ABIE40_RS23490: ABIE40_RS23490 - pyrroline-5-carboxylate reductase, at 845,098 to 845,955
_RS23490
ABIE40_RS23495: ABIE40_RS23495 - oxidoreductase, at 846,078 to 846,917
_RS23495
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.494 kb on + strand, within ABIE40_RS23475 at 843.494 kb on + strand, within ABIE40_RS23475 at 843.495 kb on - strand, within ABIE40_RS23475 at 843.495 kb on - strand, within ABIE40_RS23475 at 843.515 kb on + strand, within ABIE40_RS23475 at 843.515 kb on + strand, within ABIE40_RS23475 at 843.515 kb on + strand, within ABIE40_RS23475 at 843.516 kb on - strand, within ABIE40_RS23475 at 843.516 kb on - strand, within ABIE40_RS23475 at 843.516 kb on - strand, within ABIE40_RS23475 at 843.516 kb on - strand, within ABIE40_RS23475 at 843.764 kb on + strand, within ABIE40_RS23480 at 843.764 kb on + strand, within ABIE40_RS23480 at 843.764 kb on + strand, within ABIE40_RS23480 at 843.764 kb on + strand, within ABIE40_RS23480 at 843.764 kb on + strand, within ABIE40_RS23480 at 843.765 kb on - strand, within ABIE40_RS23480 at 843.765 kb on - strand, within ABIE40_RS23480 at 843.765 kb on - strand, within ABIE40_RS23480 at 843.815 kb on + strand, within ABIE40_RS23480 at 843.815 kb on + strand, within ABIE40_RS23480 at 843.816 kb on - strand, within ABIE40_RS23480 at 843.818 kb on + strand, within ABIE40_RS23480 at 843.818 kb on + strand, within ABIE40_RS23480 at 843.819 kb on - strand, within ABIE40_RS23480 at 843.858 kb on + strand, within ABIE40_RS23480 at 843.858 kb on + strand, within ABIE40_RS23480 at 843.858 kb on + strand, within ABIE40_RS23480 at 843.859 kb on - strand, within ABIE40_RS23480 at 843.859 kb on - strand, within ABIE40_RS23480 at 843.923 kb on + strand, within ABIE40_RS23480 at 843.923 kb on + strand, within ABIE40_RS23480 at 844.022 kb on + strand, within ABIE40_RS23480 at 844.023 kb on - strand, within ABIE40_RS23480 at 844.166 kb on + strand, within ABIE40_RS23480 at 844.167 kb on - strand, within ABIE40_RS23480 at 844.167 kb on - strand, within ABIE40_RS23480 at 844.167 kb on - strand, within ABIE40_RS23480 at 844.167 kb on - strand, within ABIE40_RS23480 at 844.205 kb on + strand, within ABIE40_RS23480 at 844.205 kb on + strand, within ABIE40_RS23480 at 844.206 kb on - strand, within ABIE40_RS23480 at 844.206 kb on - strand, within ABIE40_RS23480 at 844.298 kb on + strand at 844.298 kb on + strand at 844.299 kb on - strand at 844.299 kb on - strand at 844.299 kb on - strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.302 kb on - strand at 844.302 kb on - strand at 844.302 kb on - strand at 844.302 kb on - strand at 844.302 kb on - strand at 844.308 kb on + strand at 844.384 kb on + strand at 844.384 kb on + strand at 844.385 kb on - strand at 844.419 kb on + strand, within ABIE40_RS23485 at 844.757 kb on + strand, within ABIE40_RS23485 at 844.758 kb on - strand, within ABIE40_RS23485 at 845.212 kb on - strand, within ABIE40_RS23490 at 845.212 kb on - strand, within ABIE40_RS23490 at 845.212 kb on - strand, within ABIE40_RS23490 at 845.224 kb on + strand, within ABIE40_RS23490 at 845.224 kb on + strand, within ABIE40_RS23490 at 845.224 kb on + strand, within ABIE40_RS23490 at 845.224 kb on + strand, within ABIE40_RS23490 at 845.225 kb on - strand, within ABIE40_RS23490 at 845.225 kb on - strand, within ABIE40_RS23490 at 845.288 kb on - strand, within ABIE40_RS23490 at 845.380 kb on + strand, within ABIE40_RS23490 at 845.488 kb on - strand, within ABIE40_RS23490 at 845.573 kb on + strand, within ABIE40_RS23490 at 845.573 kb on + strand, within ABIE40_RS23490 at 845.574 kb on - strand, within ABIE40_RS23490 at 845.574 kb on - strand, within ABIE40_RS23490 at 845.574 kb on - strand, within ABIE40_RS23490 at 845.659 kb on + strand, within ABIE40_RS23490 at 845.659 kb on + strand, within ABIE40_RS23490 at 845.659 kb on + strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.660 kb on - strand, within ABIE40_RS23490 at 845.671 kb on - strand, within ABIE40_RS23490 at 846.041 kb on + strand at 846.042 kb on - strand at 846.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (C) remove 843,494 + ABIE40_RS23475 0.86 +0.3 843,494 + ABIE40_RS23475 0.86 -0.4 843,495 - ABIE40_RS23475 0.86 -0.4 843,495 - ABIE40_RS23475 0.86 +0.6 843,515 + ABIE40_RS23475 0.89 +0.2 843,515 + ABIE40_RS23475 0.89 -0.7 843,515 + ABIE40_RS23475 0.89 -0.8 843,516 - ABIE40_RS23475 0.89 -0.8 843,516 - ABIE40_RS23475 0.89 +0.3 843,516 - ABIE40_RS23475 0.89 -0.5 843,516 - ABIE40_RS23475 0.89 -0.1 843,764 + ABIE40_RS23480 0.24 +0.3 843,764 + ABIE40_RS23480 0.24 -1.1 843,764 + ABIE40_RS23480 0.24 -0.5 843,764 + ABIE40_RS23480 0.24 -0.4 843,764 + ABIE40_RS23480 0.24 +1.3 843,765 - ABIE40_RS23480 0.24 -0.5 843,765 - ABIE40_RS23480 0.24 +0.0 843,765 - ABIE40_RS23480 0.24 -0.0 843,815 + ABIE40_RS23480 0.31 +0.5 843,815 + ABIE40_RS23480 0.31 -1.8 843,816 - ABIE40_RS23480 0.31 -0.7 843,818 + ABIE40_RS23480 0.31 +0.5 843,818 + ABIE40_RS23480 0.31 -2.4 843,819 - ABIE40_RS23480 0.31 -1.1 843,858 + ABIE40_RS23480 0.37 +0.0 843,858 + ABIE40_RS23480 0.37 +0.9 843,858 + ABIE40_RS23480 0.37 +0.3 843,859 - ABIE40_RS23480 0.37 -1.0 843,859 - ABIE40_RS23480 0.37 +0.2 843,923 + ABIE40_RS23480 0.46 +0.6 843,923 + ABIE40_RS23480 0.46 -0.1 844,022 + ABIE40_RS23480 0.60 +0.3 844,023 - ABIE40_RS23480 0.60 -1.0 844,166 + ABIE40_RS23480 0.81 -0.8 844,167 - ABIE40_RS23480 0.81 +1.3 844,167 - ABIE40_RS23480 0.81 -0.5 844,167 - ABIE40_RS23480 0.81 +0.5 844,167 - ABIE40_RS23480 0.81 +0.6 844,205 + ABIE40_RS23480 0.86 -0.1 844,205 + ABIE40_RS23480 0.86 -0.5 844,206 - ABIE40_RS23480 0.86 +1.2 844,206 - ABIE40_RS23480 0.86 +2.0 844,298 + -0.8 844,298 + +0.5 844,299 - -1.0 844,299 - +0.8 844,299 - +0.4 844,301 + -0.9 844,301 + -0.3 844,301 + +0.3 844,301 + -0.1 844,301 + -0.5 844,301 + -0.1 844,302 - -0.3 844,302 - +0.6 844,302 - +0.0 844,302 - +0.8 844,302 - -0.5 844,308 + -0.3 844,384 + -0.3 844,384 + +0.3 844,385 - +1.5 844,419 + ABIE40_RS23485 0.12 +1.0 844,757 + ABIE40_RS23485 0.56 -2.7 844,758 - ABIE40_RS23485 0.56 -0.9 845,212 - ABIE40_RS23490 0.13 -1.9 845,212 - ABIE40_RS23490 0.13 +0.1 845,212 - ABIE40_RS23490 0.13 +0.7 845,224 + ABIE40_RS23490 0.15 -0.6 845,224 + ABIE40_RS23490 0.15 -0.5 845,224 + ABIE40_RS23490 0.15 -0.3 845,224 + ABIE40_RS23490 0.15 -1.0 845,225 - ABIE40_RS23490 0.15 -0.5 845,225 - ABIE40_RS23490 0.15 -0.5 845,288 - ABIE40_RS23490 0.22 -0.6 845,380 + ABIE40_RS23490 0.33 +0.2 845,488 - ABIE40_RS23490 0.45 -0.4 845,573 + ABIE40_RS23490 0.55 +0.2 845,573 + ABIE40_RS23490 0.55 +1.0 845,574 - ABIE40_RS23490 0.55 -1.1 845,574 - ABIE40_RS23490 0.55 +0.1 845,574 - ABIE40_RS23490 0.55 +0.9 845,659 + ABIE40_RS23490 0.65 +0.0 845,659 + ABIE40_RS23490 0.65 -0.1 845,659 + ABIE40_RS23490 0.65 -0.5 845,660 - ABIE40_RS23490 0.66 -1.4 845,660 - ABIE40_RS23490 0.66 +0.8 845,660 - ABIE40_RS23490 0.66 -0.4 845,660 - ABIE40_RS23490 0.66 -0.0 845,660 - ABIE40_RS23490 0.66 +0.3 845,660 - ABIE40_RS23490 0.66 -0.7 845,671 - ABIE40_RS23490 0.67 -0.8 846,041 + +1.3 846,042 - +0.1 846,042 - -0.9
Or see this region's nucleotide sequence