Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18340

Experiment: L-Methionine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS18335 and ABIE40_RS18340 are separated by 16 nucleotidesABIE40_RS18340 and ABIE40_RS18345 are separated by 48 nucleotidesABIE40_RS18345 and ABIE40_RS18350 are separated by 129 nucleotides ABIE40_RS18335: ABIE40_RS18335 - signal recognition particle protein, at 3,663,052 to 3,664,632 _RS18335 ABIE40_RS18340: ABIE40_RS18340 - chorismate mutase, at 3,664,649 to 3,664,957 _RS18340 ABIE40_RS18345: ABIE40_RS18345 - 30S ribosomal protein S16, at 3,665,006 to 3,665,374 _RS18345 ABIE40_RS18350: ABIE40_RS18350 - ribosome maturation factor RimM, at 3,665,504 to 3,666,073 _RS18350 Position (kb) 3664 3665Strain fitness (log2 ratio) -1 0 1at 3664.726 kb on + strand, within ABIE40_RS18340at 3665.454 kb on + strandat 3665.454 kb on + strandat 3665.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (C)
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3,664,726 + ABIE40_RS18340 0.25 -1.0
3,665,454 + -0.3
3,665,454 + +0.1
3,665,454 + -0.2

Or see this region's nucleotide sequence