Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27220 and ABID97_RS27225 are separated by 240 nucleotides ABID97_RS27225 and ABID97_RS27230 are separated by 50 nucleotides ABID97_RS27230 and ABID97_RS27235 are separated by 87 nucleotides
ABID97_RS27220: ABID97_RS27220 - serine hydrolase domain-containing protein, at 359,798 to 361,687
_RS27220
ABID97_RS27225: ABID97_RS27225 - ester cyclase, at 361,928 to 362,347
_RS27225
ABID97_RS27230: ABID97_RS27230 - dihydrofolate reductase family protein, at 362,398 to 362,976
_RS27230
ABID97_RS27235: ABID97_RS27235 - hypothetical protein, at 363,064 to 363,306
_RS27235
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1 at 361.395 kb on + strand, within ABID97_RS27220 at 361.757 kb on + strand at 361.757 kb on + strand at 361.758 kb on - strand at 361.779 kb on + strand at 361.790 kb on + strand at 361.791 kb on - strand at 362.075 kb on + strand, within ABID97_RS27225 at 362.858 kb on - strand, within ABID97_RS27230 at 362.977 kb on + strand at 363.249 kb on + strand, within ABID97_RS27235
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 361,395 + ABID97_RS27220 0.84 -0.4 361,757 + -0.0 361,757 + -0.5 361,758 - +0.8 361,779 + -0.0 361,790 + -0.2 361,791 - -0.4 362,075 + ABID97_RS27225 0.35 +0.3 362,858 - ABID97_RS27230 0.79 +0.2 362,977 + +0.0 363,249 + ABID97_RS27235 0.76 -0.8
Or see this region's nucleotide sequence