Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21235 and ABID97_RS21240 overlap by 8 nucleotides ABID97_RS21240 and ABID97_RS21245 are separated by 51 nucleotides ABID97_RS21245 and ABID97_RS21250 are separated by 17 nucleotides
ABID97_RS21235: ABID97_RS21235 - MFS transporter, at 4,383,861 to 4,385,096
_RS21235
ABID97_RS21240: ABID97_RS21240 - MarR family winged helix-turn-helix transcriptional regulator, at 4,385,089 to 4,385,583
_RS21240
ABID97_RS21245: ABID97_RS21245 - PaaI family thioesterase, at 4,385,635 to 4,386,180
_RS21245
ABID97_RS21250: ABID97_RS21250 - nitroreductase, at 4,386,198 to 4,386,890
_RS21250
Position (kb) 4385
4386 Strain fitness (log2 ratio) -2
-1
0
1 at 4384.216 kb on + strand, within ABID97_RS21235 at 4384.216 kb on + strand, within ABID97_RS21235 at 4384.217 kb on - strand, within ABID97_RS21235 at 4385.454 kb on - strand, within ABID97_RS21240 at 4385.496 kb on - strand, within ABID97_RS21240 at 4385.496 kb on - strand, within ABID97_RS21240 at 4385.496 kb on - strand, within ABID97_RS21240 at 4385.541 kb on + strand at 4385.983 kb on + strand, within ABID97_RS21245 at 4385.983 kb on + strand, within ABID97_RS21245 at 4385.983 kb on + strand, within ABID97_RS21245 at 4385.984 kb on - strand, within ABID97_RS21245 at 4385.984 kb on - strand, within ABID97_RS21245 at 4385.984 kb on - strand, within ABID97_RS21245 at 4386.010 kb on + strand, within ABID97_RS21245 at 4386.011 kb on - strand, within ABID97_RS21245 at 4386.261 kb on + strand at 4386.262 kb on - strand at 4386.483 kb on + strand, within ABID97_RS21250 at 4386.484 kb on - strand, within ABID97_RS21250 at 4386.484 kb on - strand, within ABID97_RS21250 at 4386.520 kb on - strand, within ABID97_RS21250
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 4,384,216 + ABID97_RS21235 0.29 -0.0 4,384,216 + ABID97_RS21235 0.29 -0.4 4,384,217 - ABID97_RS21235 0.29 -0.2 4,385,454 - ABID97_RS21240 0.74 +0.4 4,385,496 - ABID97_RS21240 0.82 -0.2 4,385,496 - ABID97_RS21240 0.82 -0.8 4,385,496 - ABID97_RS21240 0.82 -0.5 4,385,541 + +1.0 4,385,983 + ABID97_RS21245 0.64 +0.7 4,385,983 + ABID97_RS21245 0.64 -0.5 4,385,983 + ABID97_RS21245 0.64 +0.2 4,385,984 - ABID97_RS21245 0.64 -0.1 4,385,984 - ABID97_RS21245 0.64 +1.5 4,385,984 - ABID97_RS21245 0.64 +0.8 4,386,010 + ABID97_RS21245 0.69 -0.9 4,386,011 - ABID97_RS21245 0.69 +0.2 4,386,261 + +0.2 4,386,262 - +0.3 4,386,483 + ABID97_RS21250 0.41 -2.6 4,386,484 - ABID97_RS21250 0.41 +0.5 4,386,484 - ABID97_RS21250 0.41 -0.0 4,386,520 - ABID97_RS21250 0.46 -0.2
Or see this region's nucleotide sequence