Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19630

Experiment: Formate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19625 and ABID97_RS19630 are separated by 82 nucleotidesABID97_RS19630 and ABID97_RS19635 overlap by 4 nucleotides ABID97_RS19625: ABID97_RS19625 - TRAP transporter substrate-binding protein, at 4,053,554 to 4,054,525 _RS19625 ABID97_RS19630: ABID97_RS19630 - TRAP transporter small permease, at 4,054,608 to 4,055,102 _RS19630 ABID97_RS19635: ABID97_RS19635 - TRAP transporter large permease, at 4,055,099 to 4,056,376 _RS19635 Position (kb) 4054 4055 4056Strain fitness (log2 ratio) -2 -1 0 1at 4053.723 kb on - strand, within ABID97_RS19625at 4053.723 kb on - strand, within ABID97_RS19625at 4053.741 kb on - strand, within ABID97_RS19625at 4053.741 kb on - strand, within ABID97_RS19625at 4053.741 kb on - strand, within ABID97_RS19625at 4054.086 kb on - strand, within ABID97_RS19625at 4055.008 kb on - strand, within ABID97_RS19630at 4055.057 kb on + strandat 4055.058 kb on - strandat 4055.235 kb on + strand, within ABID97_RS19635at 4055.784 kb on - strand, within ABID97_RS19635at 4055.832 kb on - strand, within ABID97_RS19635at 4055.885 kb on + strand, within ABID97_RS19635at 4055.886 kb on - strand, within ABID97_RS19635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
remove
4,053,723 - ABID97_RS19625 0.17 +0.5
4,053,723 - ABID97_RS19625 0.17 -0.8
4,053,741 - ABID97_RS19625 0.19 -0.4
4,053,741 - ABID97_RS19625 0.19 -0.5
4,053,741 - ABID97_RS19625 0.19 +0.3
4,054,086 - ABID97_RS19625 0.55 -0.2
4,055,008 - ABID97_RS19630 0.81 -2.0
4,055,057 + -0.4
4,055,058 - -0.0
4,055,235 + ABID97_RS19635 0.11 -1.0
4,055,784 - ABID97_RS19635 0.54 -0.4
4,055,832 - ABID97_RS19635 0.57 +0.4
4,055,885 + ABID97_RS19635 0.62 -0.1
4,055,886 - ABID97_RS19635 0.62 -1.5

Or see this region's nucleotide sequence