Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18130

Experiment: Formate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18125 and ABID97_RS18130 overlap by 89 nucleotidesABID97_RS18130 and ABID97_RS18135 overlap by 1 nucleotides ABID97_RS18125: ABID97_RS18125 - D-amino acid dehydrogenase, at 3,742,508 to 3,743,914 _RS18125 ABID97_RS18130: ABID97_RS18130 - 2-dehydropantoate 2-reductase, at 3,743,826 to 3,744,857 _RS18130 ABID97_RS18135: ABID97_RS18135 - alanine--tRNA ligase, at 3,744,857 to 3,747,481 _RS18135 Position (kb) 3743 3744 3745Strain fitness (log2 ratio) -3 -2 -1 0 1at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.954 kb on - strand, within ABID97_RS18125at 3742.999 kb on - strand, within ABID97_RS18125at 3743.019 kb on + strand, within ABID97_RS18125at 3743.020 kb on - strand, within ABID97_RS18125at 3743.376 kb on + strand, within ABID97_RS18125at 3743.463 kb on + strand, within ABID97_RS18125at 3743.713 kb on - strand, within ABID97_RS18125at 3743.715 kb on + strand, within ABID97_RS18125at 3743.716 kb on - strand, within ABID97_RS18125at 3743.810 kb on + strandat 3743.828 kb on - strandat 3743.828 kb on - strandat 3744.437 kb on - strand, within ABID97_RS18130at 3744.437 kb on - strand, within ABID97_RS18130at 3744.785 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
remove
3,742,873 - ABID97_RS18125 0.26 +0.1
3,742,873 - ABID97_RS18125 0.26 +0.5
3,742,873 - ABID97_RS18125 0.26 +0.6
3,742,873 - ABID97_RS18125 0.26 +0.4
3,742,873 - ABID97_RS18125 0.26 -0.3
3,742,954 - ABID97_RS18125 0.32 +0.5
3,742,999 - ABID97_RS18125 0.35 -0.5
3,743,019 + ABID97_RS18125 0.36 +0.0
3,743,020 - ABID97_RS18125 0.36 -1.2
3,743,376 + ABID97_RS18125 0.62 -0.1
3,743,463 + ABID97_RS18125 0.68 -0.0
3,743,713 - ABID97_RS18125 0.86 -2.9
3,743,715 + ABID97_RS18125 0.86 +1.7
3,743,716 - ABID97_RS18125 0.86 +0.1
3,743,810 + -0.8
3,743,828 - -0.4
3,743,828 - +0.1
3,744,437 - ABID97_RS18130 0.59 -0.3
3,744,437 - ABID97_RS18130 0.59 -0.8
3,744,785 - -0.1

Or see this region's nucleotide sequence