Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15765 and ABID97_RS15770 are separated by 3 nucleotides ABID97_RS15770 and ABID97_RS15775 are separated by 19 nucleotides ABID97_RS15775 and ABID97_RS15780 are separated by 53 nucleotides
ABID97_RS15765: ABID97_RS15765 - SDR family oxidoreductase, at 3,266,678 to 3,267,472
_RS15765
ABID97_RS15770: ABID97_RS15770 - PaaI family thioesterase, at 3,267,476 to 3,267,937
_RS15770
ABID97_RS15775: ABID97_RS15775 - NADP-dependent oxidoreductase, at 3,267,957 to 3,268,973
_RS15775
ABID97_RS15780: ABID97_RS15780 - isovaleryl-CoA dehydrogenase, at 3,269,027 to 3,270,667
_RS15780
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-1
0
1 at 3267.087 kb on - strand, within ABID97_RS15765 at 3267.176 kb on + strand, within ABID97_RS15765 at 3267.239 kb on + strand, within ABID97_RS15765 at 3267.239 kb on + strand, within ABID97_RS15765 at 3267.240 kb on - strand, within ABID97_RS15765 at 3267.240 kb on - strand, within ABID97_RS15765 at 3267.240 kb on - strand, within ABID97_RS15765 at 3267.500 kb on + strand at 3267.869 kb on + strand, within ABID97_RS15770 at 3267.869 kb on + strand, within ABID97_RS15770 at 3267.935 kb on + strand at 3268.101 kb on + strand, within ABID97_RS15775 at 3268.102 kb on - strand, within ABID97_RS15775 at 3268.258 kb on - strand, within ABID97_RS15775 at 3268.519 kb on - strand, within ABID97_RS15775 at 3268.519 kb on - strand, within ABID97_RS15775 at 3268.630 kb on - strand, within ABID97_RS15775 at 3269.020 kb on + strand at 3269.075 kb on + strand at 3269.076 kb on - strand at 3269.436 kb on - strand, within ABID97_RS15780
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 3,267,087 - ABID97_RS15765 0.51 -0.2 3,267,176 + ABID97_RS15765 0.63 +0.2 3,267,239 + ABID97_RS15765 0.71 -0.2 3,267,239 + ABID97_RS15765 0.71 +0.1 3,267,240 - ABID97_RS15765 0.71 -0.0 3,267,240 - ABID97_RS15765 0.71 +1.1 3,267,240 - ABID97_RS15765 0.71 -0.1 3,267,500 + -0.4 3,267,869 + ABID97_RS15770 0.85 +1.1 3,267,869 + ABID97_RS15770 0.85 +0.2 3,267,935 + -0.4 3,268,101 + ABID97_RS15775 0.14 -1.6 3,268,102 - ABID97_RS15775 0.14 +0.2 3,268,258 - ABID97_RS15775 0.30 +0.7 3,268,519 - ABID97_RS15775 0.55 -0.4 3,268,519 - ABID97_RS15775 0.55 -0.2 3,268,630 - ABID97_RS15775 0.66 +1.2 3,269,020 + +0.1 3,269,075 + +0.2 3,269,076 - -0.3 3,269,436 - ABID97_RS15780 0.25 +0.9
Or see this region's nucleotide sequence