Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13980

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13970 and ABID97_RS13975 are separated by 12 nucleotidesABID97_RS13975 and ABID97_RS13980 overlap by 4 nucleotidesABID97_RS13980 and ABID97_RS13985 overlap by 4 nucleotides ABID97_RS13970: ABID97_RS13970 - drug/metabolite exporter YedA, at 2,901,988 to 2,902,905 _RS13970 ABID97_RS13975: ABID97_RS13975 - LysE family transporter, at 2,902,918 to 2,903,556 _RS13975 ABID97_RS13980: ABID97_RS13980 - RnfABCDGE type electron transport complex subunit B, at 2,903,553 to 2,904,185 _RS13980 ABID97_RS13985: ABID97_RS13985 - polyhydroxyalkanoate depolymerase, at 2,904,182 to 2,905,597 _RS13985 Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -1 0 1 2at 2902.678 kb on + strand, within ABID97_RS13970at 2902.678 kb on + strand, within ABID97_RS13970at 2902.678 kb on + strand, within ABID97_RS13970at 2902.717 kb on + strand, within ABID97_RS13970at 2902.718 kb on - strand, within ABID97_RS13970at 2902.762 kb on + strand, within ABID97_RS13970at 2902.763 kb on - strand, within ABID97_RS13970at 2902.841 kb on - strandat 2903.102 kb on + strand, within ABID97_RS13975at 2903.313 kb on - strand, within ABID97_RS13975at 2903.313 kb on - strand, within ABID97_RS13975at 2903.531 kb on + strandat 2903.531 kb on + strandat 2903.532 kb on - strandat 2903.532 kb on - strandat 2903.532 kb on - strandat 2904.103 kb on + strand, within ABID97_RS13980at 2904.438 kb on + strand, within ABID97_RS13985at 2904.661 kb on - strand, within ABID97_RS13985at 2904.664 kb on - strand, within ABID97_RS13985at 2904.664 kb on - strand, within ABID97_RS13985at 2904.766 kb on - strand, within ABID97_RS13985at 2904.766 kb on - strand, within ABID97_RS13985at 2904.766 kb on - strand, within ABID97_RS13985at 2904.766 kb on - strand, within ABID97_RS13985at 2904.874 kb on - strand, within ABID97_RS13985at 2905.110 kb on + strand, within ABID97_RS13985at 2905.111 kb on - strand, within ABID97_RS13985at 2905.111 kb on - strand, within ABID97_RS13985at 2905.111 kb on - strand, within ABID97_RS13985at 2905.120 kb on - strand, within ABID97_RS13985at 2905.185 kb on + strand, within ABID97_RS13985

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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2,902,678 + ABID97_RS13970 0.75 +1.1
2,902,678 + ABID97_RS13970 0.75 -0.7
2,902,678 + ABID97_RS13970 0.75 +0.7
2,902,717 + ABID97_RS13970 0.79 -0.1
2,902,718 - ABID97_RS13970 0.80 +1.1
2,902,762 + ABID97_RS13970 0.84 -1.1
2,902,763 - ABID97_RS13970 0.84 -0.1
2,902,841 - +0.2
2,903,102 + ABID97_RS13975 0.29 -0.1
2,903,313 - ABID97_RS13975 0.62 +0.3
2,903,313 - ABID97_RS13975 0.62 -0.1
2,903,531 + +0.1
2,903,531 + +0.8
2,903,532 - +0.2
2,903,532 - +0.1
2,903,532 - -0.1
2,904,103 + ABID97_RS13980 0.87 -0.8
2,904,438 + ABID97_RS13985 0.18 -0.2
2,904,661 - ABID97_RS13985 0.34 -0.5
2,904,664 - ABID97_RS13985 0.34 +0.3
2,904,664 - ABID97_RS13985 0.34 -0.2
2,904,766 - ABID97_RS13985 0.41 +0.3
2,904,766 - ABID97_RS13985 0.41 -0.9
2,904,766 - ABID97_RS13985 0.41 +1.8
2,904,766 - ABID97_RS13985 0.41 -0.0
2,904,874 - ABID97_RS13985 0.49 -0.3
2,905,110 + ABID97_RS13985 0.66 -0.2
2,905,111 - ABID97_RS13985 0.66 -0.8
2,905,111 - ABID97_RS13985 0.66 -0.5
2,905,111 - ABID97_RS13985 0.66 -0.3
2,905,120 - ABID97_RS13985 0.66 -0.4
2,905,185 + ABID97_RS13985 0.71 +0.8

Or see this region's nucleotide sequence