Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12965

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12960 and ABID97_RS12965 are separated by 38 nucleotidesABID97_RS12965 and ABID97_RS12970 overlap by 23 nucleotides ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045 _RS12960 ABID97_RS12965: ABID97_RS12965 - DUF2169 domain-containing protein, at 2,693,084 to 2,694,040 _RS12965 ABID97_RS12970: ABID97_RS12970 - pentapeptide repeat-containing protein, at 2,694,018 to 2,696,165 _RS12970 Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -1 0 1at 2692.512 kb on + strand, within ABID97_RS12960at 2693.712 kb on - strand, within ABID97_RS12965at 2694.657 kb on + strand, within ABID97_RS12970at 2694.658 kb on - strand, within ABID97_RS12970at 2694.795 kb on + strand, within ABID97_RS12970

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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2,692,512 + ABID97_RS12960 0.83 -0.3
2,693,712 - ABID97_RS12965 0.66 -1.3
2,694,657 + ABID97_RS12970 0.30 -0.4
2,694,658 - ABID97_RS12970 0.30 -0.5
2,694,795 + ABID97_RS12970 0.36 +0.4

Or see this region's nucleotide sequence