Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12865 and ABID97_RS12870 overlap by 4 nucleotides ABID97_RS12870 and ABID97_RS12875 are separated by 19 nucleotides ABID97_RS12875 and ABID97_RS12880 are separated by 77 nucleotides
ABID97_RS12865: ABID97_RS12865 - ribulose-phosphate 3-epimerase, at 2,665,902 to 2,666,606
_RS12865
ABID97_RS12870: ABID97_RS12870 - HAD-IA family hydrolase, at 2,666,603 to 2,667,331
_RS12870
ABID97_RS12875: ABID97_RS12875 - class 1 fructose-bisphosphatase, at 2,667,351 to 2,668,424
_RS12875
ABID97_RS12880: ABID97_RS12880 - phosphoribulokinase, at 2,668,502 to 2,669,380
_RS12880
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-2
-1
0
1 at 2667.649 kb on - strand, within ABID97_RS12875 at 2667.682 kb on - strand, within ABID97_RS12875 at 2668.195 kb on - strand, within ABID97_RS12875 at 2668.375 kb on - strand at 2668.375 kb on - strand at 2668.887 kb on - strand, within ABID97_RS12880 at 2669.069 kb on + strand, within ABID97_RS12880 at 2669.078 kb on + strand, within ABID97_RS12880 at 2669.078 kb on + strand, within ABID97_RS12880
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 2,667,649 - ABID97_RS12875 0.28 -1.5 2,667,682 - ABID97_RS12875 0.31 -1.7 2,668,195 - ABID97_RS12875 0.79 +0.2 2,668,375 - -1.4 2,668,375 - -1.3 2,668,887 - ABID97_RS12880 0.44 -2.4 2,669,069 + ABID97_RS12880 0.65 -1.6 2,669,078 + ABID97_RS12880 0.66 -1.3 2,669,078 + ABID97_RS12880 0.66 +1.3
Or see this region's nucleotide sequence